Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PDLIM1O00151 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDLIM1O00151 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
PDLIM1O00151 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.8■■□□□ 1.56
PDLIM1O00151 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PDLIM1O00151 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.78■■□□□ 1.56
PDLIM1O00151 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
PDLIM1O00151 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PDLIM1O00151 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
PDLIM1O00151 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.77■■□□□ 1.56
PDLIM1O00151 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
PDLIM1O00151 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.77■■□□□ 1.56
PDLIM1O00151 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.76■■□□□ 1.55
PDLIM1O00151 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
PDLIM1O00151 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
PDLIM1O00151 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDLIM1O00151 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PDLIM1O00151 AL135925.1-201ENST00000605920 1701 ntBASIC24.75■■□□□ 1.55
PDLIM1O00151 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.73■■□□□ 1.55
PDLIM1O00151 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PDLIM1O00151 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
PDLIM1O00151 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PDLIM1O00151 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.71■■□□□ 1.55
PDLIM1O00151 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
PDLIM1O00151 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.7■■□□□ 1.55
PDLIM1O00151 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.7■■□□□ 1.54
PDLIM1O00151 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.7■■□□□ 1.54
PDLIM1O00151 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.69■■□□□ 1.54
PDLIM1O00151 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PDLIM1O00151 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.67■■□□□ 1.54
PDLIM1O00151 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PDLIM1O00151 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.66■■□□□ 1.54
PDLIM1O00151 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.65■■□□□ 1.54
PDLIM1O00151 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 AL121749.1-202ENST00000609313 2153 ntBASIC24.64■■□□□ 1.54
PDLIM1O00151 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
PDLIM1O00151 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PDLIM1O00151 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
PDLIM1O00151 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PDLIM1O00151 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.62■■□□□ 1.53
PDLIM1O00151 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDLIM1O00151 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDLIM1O00151 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PDLIM1O00151 DRD5P2-201ENST00000421395 2012 ntBASIC24.61■■□□□ 1.53
PDLIM1O00151 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PDLIM1O00151 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
PDLIM1O00151 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
PDLIM1O00151 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PDLIM1O00151 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.53
PDLIM1O00151 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PDLIM1O00151 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PDLIM1O00151 AL139393.2-201ENST00000608721 2025 ntBASIC24.57■■□□□ 1.52
PDLIM1O00151 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PDLIM1O00151 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PDLIM1O00151 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.57■■□□□ 1.52
PDLIM1O00151 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PDLIM1O00151 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.56■■□□□ 1.52
PDLIM1O00151 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PDLIM1O00151 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.54■■□□□ 1.52
PDLIM1O00151 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
PDLIM1O00151 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
PDLIM1O00151 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PDLIM1O00151 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.53■■□□□ 1.52
PDLIM1O00151 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
PDLIM1O00151 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PDLIM1O00151 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PDLIM1O00151 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
PDLIM1O00151 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.51■■□□□ 1.51
PDLIM1O00151 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
PDLIM1O00151 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PDLIM1O00151 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PDLIM1O00151 RARRES2P7-201ENST00000567349 469 ntBASIC24.5■■□□□ 1.51
PDLIM1O00151 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms