Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
PDLIM1O00151 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
PDLIM1O00151 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
PDLIM1O00151 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC24.8■■□□□ 1.56
PDLIM1O00151 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC24.8■■□□□ 1.56
PDLIM1O00151 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC24.79■■□□□ 1.56
PDLIM1O00151 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
PDLIM1O00151 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC24.78■■□□□ 1.56
PDLIM1O00151 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC24.78■■□□□ 1.56
PDLIM1O00151 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
PDLIM1O00151 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC24.77■■□□□ 1.56
PDLIM1O00151 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC24.77■■□□□ 1.56
PDLIM1O00151 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.77■■□□□ 1.56
PDLIM1O00151 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC24.77■■□□□ 1.56
PDLIM1O00151 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC24.76■■□□□ 1.55
PDLIM1O00151 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC24.76■■□□□ 1.55
PDLIM1O00151 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC24.76■■□□□ 1.55
PDLIM1O00151 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC24.75■■□□□ 1.55
PDLIM1O00151 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PDLIM1O00151 AL135925.1-201ENST00000605920 1701 ntBASIC24.75■■□□□ 1.55
PDLIM1O00151 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC24.73■■□□□ 1.55
PDLIM1O00151 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PDLIM1O00151 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PDLIM1O00151 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PDLIM1O00151 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
PDLIM1O00151 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.71■■□□□ 1.55
PDLIM1O00151 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC24.71■■□□□ 1.55
PDLIM1O00151 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.7■■□□□ 1.55
PDLIM1O00151 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.7■■□□□ 1.55
PDLIM1O00151 PKM-204ENST00000449901 2526 ntTSL 2 BASIC24.7■■□□□ 1.54
PDLIM1O00151 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC24.7■■□□□ 1.54
PDLIM1O00151 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.69■■□□□ 1.54
PDLIM1O00151 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PDLIM1O00151 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PDLIM1O00151 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC24.67■■□□□ 1.54
PDLIM1O00151 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC24.67■■□□□ 1.54
PDLIM1O00151 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC24.66■■□□□ 1.54
PDLIM1O00151 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
PDLIM1O00151 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC24.65■■□□□ 1.54
PDLIM1O00151 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
PDLIM1O00151 AL121749.1-202ENST00000609313 2153 ntBASIC24.64■■□□□ 1.54
PDLIM1O00151 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC24.64■■□□□ 1.54
PDLIM1O00151 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
PDLIM1O00151 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC24.63■■□□□ 1.53
PDLIM1O00151 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.63■■□□□ 1.53
PDLIM1O00151 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC24.62■■□□□ 1.53
PDLIM1O00151 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDLIM1O00151 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
PDLIM1O00151 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
PDLIM1O00151 DRD5P2-201ENST00000421395 2012 ntBASIC24.61■■□□□ 1.53
PDLIM1O00151 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
PDLIM1O00151 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
PDLIM1O00151 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC24.59■■□□□ 1.53
PDLIM1O00151 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
PDLIM1O00151 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC24.58■■□□□ 1.53
PDLIM1O00151 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PDLIM1O00151 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
PDLIM1O00151 AL139393.2-201ENST00000608721 2025 ntBASIC24.57■■□□□ 1.52
PDLIM1O00151 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PDLIM1O00151 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
PDLIM1O00151 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC24.57■■□□□ 1.52
PDLIM1O00151 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PDLIM1O00151 KLF16-203ENST00000592313 508 ntTSL 3 BASIC24.56■■□□□ 1.52
PDLIM1O00151 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
PDLIM1O00151 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
PDLIM1O00151 PKM-203ENST00000389093 2279 ntTSL 5 BASIC24.54■■□□□ 1.52
PDLIM1O00151 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC24.54■■□□□ 1.52
PDLIM1O00151 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
PDLIM1O00151 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC24.54■■□□□ 1.52
PDLIM1O00151 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC24.53■■□□□ 1.52
PDLIM1O00151 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC24.53■■□□□ 1.52
PDLIM1O00151 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
PDLIM1O00151 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
PDLIM1O00151 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.52■■□□□ 1.52
PDLIM1O00151 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC24.51■■□□□ 1.51
PDLIM1O00151 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
PDLIM1O00151 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
PDLIM1O00151 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
PDLIM1O00151 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
PDLIM1O00151 RARRES2P7-201ENST00000567349 469 ntBASIC24.5■■□□□ 1.51
PDLIM1O00151 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 185.7 ms