Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.75■□□□□ 0.91
TRAV1-1A0A0B4J248 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
TRAV1-1A0A0B4J248 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
TRAV1-1A0A0B4J248 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
TRAV1-1A0A0B4J248 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
TRAV1-1A0A0B4J248 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
TRAV1-1A0A0B4J248 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV1-1A0A0B4J248 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV1-1A0A0B4J248 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRAV1-1A0A0B4J248 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.68■□□□□ 0.9
TRAV1-1A0A0B4J248 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.68■□□□□ 0.9
TRAV1-1A0A0B4J248 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.67■□□□□ 0.9
TRAV1-1A0A0B4J248 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
TRAV1-1A0A0B4J248 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
TRAV1-1A0A0B4J248 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.66■□□□□ 0.9
TRAV1-1A0A0B4J248 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-1A0A0B4J248 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRAV1-1A0A0B4J248 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-1A0A0B4J248 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-1A0A0B4J248 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRAV1-1A0A0B4J248 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRAV1-1A0A0B4J248 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-1A0A0B4J248 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-1A0A0B4J248 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-1A0A0B4J248 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TRAV1-1A0A0B4J248 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRAV1-1A0A0B4J248 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
TRAV1-1A0A0B4J248 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
TRAV1-1A0A0B4J248 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRAV1-1A0A0B4J248 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-1A0A0B4J248 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-1A0A0B4J248 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-1A0A0B4J248 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRAV1-1A0A0B4J248 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.62■□□□□ 0.89
TRAV1-1A0A0B4J248 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TRAV1-1A0A0B4J248 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV1-1A0A0B4J248 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.61■□□□□ 0.89
TRAV1-1A0A0B4J248 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.6■□□□□ 0.89
TRAV1-1A0A0B4J248 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRAV1-1A0A0B4J248 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRAV1-1A0A0B4J248 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV1-1A0A0B4J248 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV1-1A0A0B4J248 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRAV1-1A0A0B4J248 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV1-1A0A0B4J248 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRAV1-1A0A0B4J248 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.58■□□□□ 0.88
TRAV1-1A0A0B4J248 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRAV1-1A0A0B4J248 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
TRAV1-1A0A0B4J248 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
TRAV1-1A0A0B4J248 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-1A0A0B4J248 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
TRAV1-1A0A0B4J248 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-1A0A0B4J248 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRAV1-1A0A0B4J248 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-1A0A0B4J248 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC20.55■□□□□ 0.88
TRAV1-1A0A0B4J248 BX255925.1-201ENST00000566954 1854 ntBASIC20.55■□□□□ 0.88
TRAV1-1A0A0B4J248 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRAV1-1A0A0B4J248 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
TRAV1-1A0A0B4J248 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TRAV1-1A0A0B4J248 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.53■□□□□ 0.88
TRAV1-1A0A0B4J248 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.53■□□□□ 0.88
TRAV1-1A0A0B4J248 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC20.53■□□□□ 0.88
TRAV1-1A0A0B4J248 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.52■□□□□ 0.88
TRAV1-1A0A0B4J248 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
TRAV1-1A0A0B4J248 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
TRAV1-1A0A0B4J248 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TRAV1-1A0A0B4J248 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-1A0A0B4J248 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
TRAV1-1A0A0B4J248 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRAV1-1A0A0B4J248 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
TRAV1-1A0A0B4J248 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-1A0A0B4J248 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-1A0A0B4J248 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-1A0A0B4J248 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRAV1-1A0A0B4J248 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-1A0A0B4J248 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.48■□□□□ 0.87
TRAV1-1A0A0B4J248 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRAV1-1A0A0B4J248 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
TRAV1-1A0A0B4J248 AL449106.1-201ENST00000608517 1980 ntBASIC20.48■□□□□ 0.87
TRAV1-1A0A0B4J248 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-1A0A0B4J248 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRAV1-1A0A0B4J248 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRAV1-1A0A0B4J248 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRAV1-1A0A0B4J248 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms