Protein–RNA interactions for Protein: A0A140T963

RNF103-CHMP3, RNF103-CHMP3 readthrough (Fragment), humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF103-CHMP3A0A140T963 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC25.42■■□□□ 1.66
RNF103-CHMP3A0A140T963 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.41■■□□□ 1.66
RNF103-CHMP3A0A140T963 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
RNF103-CHMP3A0A140T963 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RNF103-CHMP3A0A140T963 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC25.4■■□□□ 1.66
RNF103-CHMP3A0A140T963 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC25.39■■□□□ 1.66
RNF103-CHMP3A0A140T963 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.39■■□□□ 1.65
RNF103-CHMP3A0A140T963 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
RNF103-CHMP3A0A140T963 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RNF103-CHMP3A0A140T963 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RNF103-CHMP3A0A140T963 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.36■■□□□ 1.65
RNF103-CHMP3A0A140T963 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RNF103-CHMP3A0A140T963 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RNF103-CHMP3A0A140T963 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
RNF103-CHMP3A0A140T963 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
RNF103-CHMP3A0A140T963 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF103-CHMP3A0A140T963 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF103-CHMP3A0A140T963 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF103-CHMP3A0A140T963 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
RNF103-CHMP3A0A140T963 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF103-CHMP3A0A140T963 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF103-CHMP3A0A140T963 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF103-CHMP3A0A140T963 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF103-CHMP3A0A140T963 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RNF103-CHMP3A0A140T963 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
RNF103-CHMP3A0A140T963 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.3■■□□□ 1.64
RNF103-CHMP3A0A140T963 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.3■■□□□ 1.64
RNF103-CHMP3A0A140T963 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC25.29■■□□□ 1.64
RNF103-CHMP3A0A140T963 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.28■■□□□ 1.64
RNF103-CHMP3A0A140T963 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.28■■□□□ 1.64
RNF103-CHMP3A0A140T963 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RNF103-CHMP3A0A140T963 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC25.27■■□□□ 1.64
RNF103-CHMP3A0A140T963 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.27■■□□□ 1.64
RNF103-CHMP3A0A140T963 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
RNF103-CHMP3A0A140T963 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
RNF103-CHMP3A0A140T963 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RNF103-CHMP3A0A140T963 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RNF103-CHMP3A0A140T963 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RNF103-CHMP3A0A140T963 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
RNF103-CHMP3A0A140T963 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
RNF103-CHMP3A0A140T963 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
RNF103-CHMP3A0A140T963 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC25.23■■□□□ 1.63
RNF103-CHMP3A0A140T963 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RNF103-CHMP3A0A140T963 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
RNF103-CHMP3A0A140T963 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RNF103-CHMP3A0A140T963 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RNF103-CHMP3A0A140T963 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RNF103-CHMP3A0A140T963 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
RNF103-CHMP3A0A140T963 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
RNF103-CHMP3A0A140T963 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
RNF103-CHMP3A0A140T963 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
RNF103-CHMP3A0A140T963 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RNF103-CHMP3A0A140T963 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RNF103-CHMP3A0A140T963 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
RNF103-CHMP3A0A140T963 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.18■■□□□ 1.62
RNF103-CHMP3A0A140T963 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RNF103-CHMP3A0A140T963 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.17■■□□□ 1.62
RNF103-CHMP3A0A140T963 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RNF103-CHMP3A0A140T963 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RNF103-CHMP3A0A140T963 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RNF103-CHMP3A0A140T963 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.15■■□□□ 1.62
RNF103-CHMP3A0A140T963 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.15■■□□□ 1.62
RNF103-CHMP3A0A140T963 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.15■■□□□ 1.62
RNF103-CHMP3A0A140T963 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RNF103-CHMP3A0A140T963 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
RNF103-CHMP3A0A140T963 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC25.14■■□□□ 1.62
RNF103-CHMP3A0A140T963 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
RNF103-CHMP3A0A140T963 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RNF103-CHMP3A0A140T963 AL133380.1-201ENST00000506013 324 ntBASIC25.14■■□□□ 1.62
RNF103-CHMP3A0A140T963 ST7-AS1-201ENST00000456775 1889 ntBASIC25.14■■□□□ 1.61
RNF103-CHMP3A0A140T963 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
RNF103-CHMP3A0A140T963 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
RNF103-CHMP3A0A140T963 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
RNF103-CHMP3A0A140T963 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
RNF103-CHMP3A0A140T963 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RNF103-CHMP3A0A140T963 WASH5P-204ENST00000632292 975 ntBASIC25.12■■□□□ 1.61
RNF103-CHMP3A0A140T963 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
RNF103-CHMP3A0A140T963 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
RNF103-CHMP3A0A140T963 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC25.11■■□□□ 1.61
RNF103-CHMP3A0A140T963 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
RNF103-CHMP3A0A140T963 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.1■■□□□ 1.61
RNF103-CHMP3A0A140T963 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
RNF103-CHMP3A0A140T963 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC25.09■■□□□ 1.61
RNF103-CHMP3A0A140T963 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
RNF103-CHMP3A0A140T963 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF103-CHMP3A0A140T963 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF103-CHMP3A0A140T963 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
RNF103-CHMP3A0A140T963 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
RNF103-CHMP3A0A140T963 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.04■■□□□ 1.6
RNF103-CHMP3A0A140T963 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RNF103-CHMP3A0A140T963 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
RNF103-CHMP3A0A140T963 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
RNF103-CHMP3A0A140T963 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF103-CHMP3A0A140T963 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC25.02■■□□□ 1.6
RNF103-CHMP3A0A140T963 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
RNF103-CHMP3A0A140T963 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.01■■□□□ 1.59
RNF103-CHMP3A0A140T963 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.01■■□□□ 1.59
RNF103-CHMP3A0A140T963 RARRES2P7-201ENST00000567349 469 ntBASIC25.01■■□□□ 1.59
RNF103-CHMP3A0A140T963 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
RNF103-CHMP3A0A140T963 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC25.01■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms