Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAV40A0A0B4J280 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
TRAV40A0A0B4J280 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV40A0A0B4J280 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV40A0A0B4J280 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV40A0A0B4J280 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV40A0A0B4J280 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
TRAV40A0A0B4J280 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV40A0A0B4J280 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC21.79■■□□□ 1.08
TRAV40A0A0B4J280 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.79■■□□□ 1.08
TRAV40A0A0B4J280 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TRAV40A0A0B4J280 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
TRAV40A0A0B4J280 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAV40A0A0B4J280 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TRAV40A0A0B4J280 SCX-201ENST00000567180 999 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TRAV40A0A0B4J280 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TRAV40A0A0B4J280 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC21.76■■□□□ 1.07
TRAV40A0A0B4J280 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TRAV40A0A0B4J280 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 PVT1-219ENST00000523427 938 ntTSL 3 BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TRAV40A0A0B4J280 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV40A0A0B4J280 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TRAV40A0A0B4J280 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC21.73■■□□□ 1.07
TRAV40A0A0B4J280 HGH1-207ENST00000628266 258 ntTSL 5 BASIC21.73■■□□□ 1.07
TRAV40A0A0B4J280 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TRAV40A0A0B4J280 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.73■■□□□ 1.07
TRAV40A0A0B4J280 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
TRAV40A0A0B4J280 DUX4L29-201ENST00000425409 679 ntBASIC21.72■■□□□ 1.07
TRAV40A0A0B4J280 CIB2-204ENST00000557846 934 ntTSL 3 BASIC21.72■■□□□ 1.07
TRAV40A0A0B4J280 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
TRAV40A0A0B4J280 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV40A0A0B4J280 ZNRF2P2-203ENST00000454624 420 ntBASIC21.71■■□□□ 1.07
TRAV40A0A0B4J280 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
TRAV40A0A0B4J280 AC108673.1-201ENST00000510422 1159 ntBASIC21.71■■□□□ 1.07
TRAV40A0A0B4J280 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
TRAV40A0A0B4J280 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.7■■□□□ 1.06
TRAV40A0A0B4J280 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
TRAV40A0A0B4J280 MIR6090-201ENST00000622481 60 ntBASIC21.68■■□□□ 1.06
TRAV40A0A0B4J280 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV40A0A0B4J280 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC21.67■■□□□ 1.06
TRAV40A0A0B4J280 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
TRAV40A0A0B4J280 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
TRAV40A0A0B4J280 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
TRAV40A0A0B4J280 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
TRAV40A0A0B4J280 AC021231.2-201ENST00000594613 730 ntBASIC21.65■■□□□ 1.06
TRAV40A0A0B4J280 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC21.64■■□□□ 1.06
TRAV40A0A0B4J280 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.64■■□□□ 1.05
TRAV40A0A0B4J280 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC21.64■■□□□ 1.05
TRAV40A0A0B4J280 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
TRAV40A0A0B4J280 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
TRAV40A0A0B4J280 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV40A0A0B4J280 AL161658.1-201ENST00000623641 1967 ntBASIC21.62■■□□□ 1.05
TRAV40A0A0B4J280 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TRAV40A0A0B4J280 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC21.62■■□□□ 1.05
TRAV40A0A0B4J280 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC21.62■■□□□ 1.05
TRAV40A0A0B4J280 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 HLA-V-202ENST00000446817 847 ntBASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.61■■□□□ 1.05
TRAV40A0A0B4J280 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV40A0A0B4J280 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TRAV40A0A0B4J280 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
TRAV40A0A0B4J280 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TRAV40A0A0B4J280 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TRAV40A0A0B4J280 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
TRAV40A0A0B4J280 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TRAV40A0A0B4J280 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
TRAV40A0A0B4J280 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.56■■□□□ 1.04
TRAV40A0A0B4J280 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TRAV40A0A0B4J280 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV40A0A0B4J280 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV40A0A0B4J280 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC21.55■■□□□ 1.04
TRAV40A0A0B4J280 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC21.55■■□□□ 1.04
TRAV40A0A0B4J280 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TRAV40A0A0B4J280 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
TRAV40A0A0B4J280 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
TRAV40A0A0B4J280 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC21.54■■□□□ 1.04
TRAV40A0A0B4J280 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV40A0A0B4J280 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TRAV40A0A0B4J280 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TRAV40A0A0B4J280 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms