Protein–RNA interactions for Protein: O00571

DDX3X, ATP-dependent RNA helicase DDX3X, humanhuman

Known RBP eCLIP

Length 662 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX3XO00571 ACACA-238ENST00000616352 1626 ntTSL 1 (best)24.38■■□□□ 1.495e-7■□□□□ 9
DDX3XO00571 TRIP10-204ENST00000595319 776 ntTSL 523.9■■□□□ 1.425e-7■□□□□ 9
DDX3XO00571 ACACA-239ENST00000617548 1063 ntTSL 1 (best)23.61■■□□□ 1.375e-7■□□□□ 9
DDX3XO00571 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC23.56■■□□□ 1.365e-7■□□□□ 9
DDX3XO00571 PTPN4-208ENST00000460289 577 ntTSL 423.53■■□□□ 1.365e-7■□□□□ 9
DDX3XO00571 MCRIP1-209ENST00000575090 752 ntTSL 323.05■■□□□ 1.284e-13■□□□□ 9
DDX3XO00571 PTPN4-207ENST00000460162 623 ntTSL 422.97■■□□□ 1.275e-7■□□□□ 9
DDX3XO00571 PTPN4-211ENST00000488279 662 ntTSL 522.83■■□□□ 1.255e-7■□□□□ 9
DDX3XO00571 ACACA-236ENST00000615229 1468 ntTSL 1 (best)22.68■■□□□ 1.225e-7■□□□□ 9
DDX3XO00571 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC22.27■■□□□ 1.165e-7■□□□□ 9
DDX3XO00571 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.075e-7■□□□□ 9
DDX3XO00571 PTPN4-202ENST00000420482 568 ntTSL 421.53■■□□□ 1.045e-7■□□□□ 9
DDX3XO00571 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.5■■□□□ 1.035e-7■□□□□ 9
DDX3XO00571 ACACA-242ENST00000618351 716 ntTSL 321.23■□□□□ 0.995e-7■□□□□ 9
DDX3XO00571 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.985e-7■□□□□ 9
DDX3XO00571 SLC9A6-205ENST00000627534 648 ntTSL 421.07■□□□□ 0.965e-7■□□□□ 9
DDX3XO00571 TSSC4-206ENST00000440813 851 ntAPPRIS ALT2 TSL 321■□□□□ 0.955e-7■□□□□ 9
DDX3XO00571 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.99■□□□□ 0.795e-7■□□□□ 9
DDX3XO00571 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.755e-7■□□□□ 9
DDX3XO00571 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.715e-7■□□□□ 9
DDX3XO00571 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.695e-7■□□□□ 9
DDX3XO00571 TSSC4-210ENST00000496468 912 ntAPPRIS ALT2 TSL 1 (best)19.31■□□□□ 0.685e-7■□□□□ 9
DDX3XO00571 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC19.16■□□□□ 0.665e-7■□□□□ 9
DDX3XO00571 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.92■□□□□ 0.625e-7■□□□□ 9
DDX3XO00571 TSSC4-209ENST00000485682 979 ntAPPRIS ALT2 TSL 218.16■□□□□ 0.55e-7■□□□□ 9
DDX3XO00571 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.04■□□□□ 0.485e-7■□□□□ 9
DDX3XO00571 HSCB-204ENST00000450178 1048 ntTSL 317.97■□□□□ 0.475e-7■□□□□ 9
DDX3XO00571 TSSC4-205ENST00000437110 974 ntAPPRIS ALT2 TSL 217.81■□□□□ 0.445e-7■□□□□ 9
DDX3XO00571 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC17.11■□□□□ 0.335e-7■□□□□ 9
DDX3XO00571 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.03■□□□□ 0.325e-7■□□□□ 9
DDX3XO00571 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.9■□□□□ 0.35e-7■□□□□ 9
DDX3XO00571 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.295e-7■□□□□ 9
DDX3XO00571 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.87■□□□□ 0.295e-7■□□□□ 9
DDX3XO00571 NDE1-205ENST00000572756 915 ntTSL 516.58■□□□□ 0.245e-7■□□□□ 9
DDX3XO00571 TRIP10-212ENST00000600677 2022 ntTSL 516.58■□□□□ 0.245e-7■□□□□ 9
DDX3XO00571 TSSC4-204ENST00000435795 863 ntAPPRIS ALT2 TSL 316.5■□□□□ 0.235e-7■□□□□ 9
DDX3XO00571 DHCR7-210ENST00000533800 837 ntTSL 316.19■□□□□ 0.185e-7■□□□□ 9
DDX3XO00571 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.1■□□□□ 0.175e-7■□□□□ 9
DDX3XO00571 TRIP10-203ENST00000595305 2068 ntTSL 215.95■□□□□ 0.145e-7■□□□□ 9
DDX3XO00571 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.81■□□□□ 0.125e-7■□□□□ 9
DDX3XO00571 RPS3-220ENST00000534555 387 ntTSL 315.55■□□□□ 0.083e-19■□□□□ 9
DDX3XO00571 TRIP10-206ENST00000596543 545 ntTSL 415.46■□□□□ 0.075e-7■□□□□ 9
DDX3XO00571 NDE1-203ENST00000570727 588 ntTSL 414.83□□□□□ -0.045e-7■□□□□ 9
DDX3XO00571 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.055e-7■□□□□ 9
DDX3XO00571 CYB5R3-208ENST00000470741 3938 ntTSL 1 (best)14.65□□□□□ -0.065e-7■□□□□ 9
DDX3XO00571 FAM177A1-204ENST00000553852 516 ntTSL 214.37□□□□□ -0.114e-13■□□□□ 9
DDX3XO00571 HSCB-206ENST00000485599 656 ntTSL 514.23□□□□□ -0.135e-7■□□□□ 9
DDX3XO00571 EXT1-203ENST00000437196 1446 ntTSL 514.18□□□□□ -0.145e-7■□□□□ 9
DDX3XO00571 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC14.18□□□□□ -0.145e-7■□□□□ 9
DDX3XO00571 TRIP10-207ENST00000596673 586 ntTSL 314.18□□□□□ -0.145e-7■□□□□ 9
DDX3XO00571 TRIP10-205ENST00000596078 1010 ntTSL 513.95□□□□□ -0.185e-7■□□□□ 9
DDX3XO00571 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 513.88□□□□□ -0.195e-7■□□□□ 9
DDX3XO00571 HSCB-203ENST00000420442 792 ntTSL 512.69□□□□□ -0.385e-7■□□□□ 9
DDX3XO00571 ACACA-237ENST00000616317 9961 ntTSL 1 (best) BASIC12.63□□□□□ -0.395e-7■□□□□ 9
DDX3XO00571 MARK4-207ENST00000590909 594 ntTSL 512.52□□□□□ -0.415e-7■□□□□ 9
DDX3XO00571 RPS14-204ENST00000518139 669 ntTSL 311.89□□□□□ -0.515e-7■□□□□ 9
DDX3XO00571 PTPN4-201ENST00000263708 10300 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.595e-7■□□□□ 9
DDX3XO00571 FAM177A1-211ENST00000556858 617 ntTSL 510.11□□□□□ -0.794e-13■□□□□ 9
DDX3XO00571 NDE1-201ENST00000396354 3221 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.85e-7■□□□□ 9
DDX3XO00571 MDH2-208ENST00000492663 546 ntTSL 29.94□□□□□ -0.829e-42■□□□□ 9
DDX3XO00571 SLC9A6-209ENST00000636347 4867 ntTSL 5 BASIC9.87□□□□□ -0.835e-7■□□□□ 9
DDX3XO00571 RPS3-211ENST00000528847 639 ntTSL 59.75□□□□□ -0.853e-19■□□□□ 9
DDX3XO00571 NDE1-207ENST00000573203 762 ntTSL 39.27□□□□□ -0.935e-7■□□□□ 9
DDX3XO00571 SLC9A6-207ENST00000636092 4697 ntTSL 5 BASIC9.22□□□□□ -0.935e-7■□□□□ 9
DDX3XO00571 SLC9A6-213ENST00000637234 4691 ntTSL 5 BASIC9.19□□□□□ -0.945e-7■□□□□ 9
DDX3XO00571 PPM1A-205ENST00000528241 564 ntTSL 59.13□□□□□ -0.954e-13■□□□□ 9
DDX3XO00571 SLC9A6-214ENST00000637581 4872 ntTSL 5 BASIC8.92□□□□□ -0.985e-7■□□□□ 9
DDX3XO00571 NDE1-202ENST00000396355 3936 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -15e-7■□□□□ 9
DDX3XO00571 AC083841.1-201ENST00000523657 670 ntTSL 2 BASIC7.9□□□□□ -1.145e-7■□□□□ 9
DDX3XO00571 ZMYM2-211ENST00000620447 1069 ntTSL 1 (best)6.71□□□□□ -1.345e-7■□□□□ 9
DDX3XO00571 ITGA6-211ENST00000497107 573 ntTSL 26.66□□□□□ -1.345e-7■□□□□ 9
DDX3XO00571 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.62□□□□□ -1.355e-7■□□□□ 9
DDX3XO00571 PTPN4-210ENST00000485247 590 ntTSL 35.15□□□□□ -1.595e-7■□□□□ 9
DDX3XO00571 XRCC5-205ENST00000451695 415 ntTSL 52.76□□□□□ -1.979e-31■□□□□ 9
DDX3XO00571 NSD1-211ENST00000511258 809 ntTSL 3 BASIC13.94□□□□□ -0.183e-6■□□□□ 9
DDX3XO00571 NSD1-216ENST00000638627 1866 ntTSL 5 BASIC9.05□□□□□ -0.963e-6■□□□□ 9
DDX3XO00571 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC6.27□□□□□ -1.413e-6■□□□□ 9
DDX3XO00571 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.246e-10■□□□□ 9
DDX3XO00571 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.36■■□□□ 1.176e-10■□□□□ 9
DDX3XO00571 CALM1-207ENST00000553964 2670 ntTSL 1 (best)21.04■□□□□ 0.966e-10■□□□□ 9
DDX3XO00571 RALA-203ENST00000436179 882 ntTSL 217.81■□□□□ 0.446e-10■□□□□ 9
DDX3XO00571 DAZAP2-211ENST00000551534 571 ntTSL 417.1■□□□□ 0.336e-10■□□□□ 9
DDX3XO00571 DAZAP2-207ENST00000549497 567 ntTSL 413.79□□□□□ -0.26e-10■□□□□ 9
DDX3XO00571 DAZAP2-203ENST00000436900 1811 ntTSL 512.22□□□□□ -0.456e-10■□□□□ 9
DDX3XO00571 DAZAP2-205ENST00000449723 2098 ntTSL 5 BASIC12.15□□□□□ -0.466e-10■□□□□ 9
DDX3XO00571 DAZAP2-214ENST00000552459 3664 ntTSL 211.88□□□□□ -0.516e-10■□□□□ 9
DDX3XO00571 DAZAP2-215ENST00000604900 1045 ntTSL 3 BASIC11.25□□□□□ -0.616e-10■□□□□ 9
DDX3XO00571 RALA-202ENST00000434466 768 ntTSL 39.26□□□□□ -0.936e-10■□□□□ 9
DDX3XO00571 DAZAP2-212ENST00000551919 485 ntTSL 48.77□□□□□ -1.016e-10■□□□□ 9
DDX3XO00571 DAZAP2-202ENST00000425012 1117 ntTSL 2 BASIC8.53□□□□□ -1.046e-10■□□□□ 9
DDX3XO00571 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC7.86□□□□□ -1.156e-10■□□□□ 9
DDX3XO00571 DAZAP2-208ENST00000549555 872 ntTSL 2 BASIC7.86□□□□□ -1.156e-10■□□□□ 9
DDX3XO00571 DAZAP2-206ENST00000549041 598 ntTSL 27.36□□□□□ -1.236e-10■□□□□ 9
DDX3XO00571 CALM1-211ENST00000555267 554 ntTSL 26.44□□□□□ -1.386e-10■□□□□ 9
DDX3XO00571 DAZAP2-213ENST00000552173 539 ntTSL 44.29□□□□□ -1.726e-10■□□□□ 9
DDX3XO00571 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC4.28□□□□□ -1.726e-10■□□□□ 9
DDX3XO00571 PPP2R2D-204ENST00000482010 1792 ntTSL 219.6■□□□□ 0.732e-6■□□□□ 9
DDX3XO00571 ALDOA-208ENST00000562679 906 ntTSL 514.91□□□□□ -0.029e-26■□□□□ 9
DDX3XO00571 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.118e-24■□□□□ 9
DDX3XO00571 GDI2-209ENST00000609712 622 ntTSL 312.76□□□□□ -0.378e-24■□□□□ 9
Retrieved 100 of 47,714 protein–RNA pairs in 4121.7 ms