RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 NISCHQ9Y2I1 1504 aa52.72■■■■■ 6.03
PTPN4-202ENST00000420482 CCDC180Q9P1Z9 1646 aa47.38■■■■■ 5.17
PTPN4-202ENST00000420482 ABCC9O60706 1549 aa47.26■■■■■ 5.16
PTPN4-202ENST00000420482 RB1CC1Q8TDY2 1594 aa45.05■■■■■ 4.8
PTPN4-202ENST00000420482 NACADO15069 1562 aa44.71■■■■■ 4.75
PTPN4-202ENST00000420482 DCAF8L2P0C7V8 631 aa44.42■■■■■ 4.7
PTPN4-202ENST00000420482 DNAJC5BQ9UF47 199 aa44.34■■■■■ 4.69
PTPN4-202ENST00000420482 UNC13AQ9UPW8 1703 aa44.16■■■■■ 4.66
PTPN4-202ENST00000420482 MYO15BQ96JP2 1530 aa44.09■■■■■ 4.65
PTPN4-202ENST00000420482 PABPN1Q86U42 306 aaKnown RBP eCLIP43.87■■■■■ 4.61
PTPN4-202ENST00000420482 ZCCHC6Q5VYS8 1495 aaKnown RBP43.76■■■■■ 4.6
PTPN4-202ENST00000420482 BICRAQ9NZM4 1560 aa43.75■■■■■ 4.59
PTPN4-202ENST00000420482 DCAF1Q9Y4B6 1507 aa43.63■■■■■ 4.57
PTPN4-202ENST00000420482 SHROOM4Q9ULL8 1493 aa43.2■■■■■ 4.51
PTPN4-202ENST00000420482 SCRIBQ14160 1630 aa43.03■■■■■ 4.48
PTPN4-202ENST00000420482 CC2D2AQ9P2K1 1620 aa42.77■■■■■ 4.44
PTPN4-202ENST00000420482 EIF4G1Q04637 1599 aaKnown RBP42.66■■■■■ 4.42
PTPN4-202ENST00000420482 CECR2Q9BXF3 1484 aa42.61■■■■■ 4.41
PTPN4-202ENST00000420482 NCAPD3P42695 1498 aa41.21■■■■■ 4.19
PTPN4-202ENST00000420482 SMARCA4P51532 1647 aa41.08■■■■■ 4.17
PTPN4-202ENST00000420482 ATAD2BQ9ULI0 1458 aa41.07■■■■■ 4.16
PTPN4-202ENST00000420482 SMARCA2P51531 1590 aa41.01■■■■■ 4.16
PTPN4-202ENST00000420482 HMGXB3Q12766 1538 aa40.99■■■■■ 4.15
PTPN4-202ENST00000420482 BAZ1AQ9NRL2 1556 aaPredicted RBP40.97■■■■■ 4.15
PTPN4-202ENST00000420482 CUX2O14529 1486 aa40.87■■■■■ 4.13
PTPN4-202ENST00000420482 DNAJC5Q9H3Z4 198 aa40.84■■■■■ 4.13
PTPN4-202ENST00000420482 ERCC6Q03468 1493 aa40.82■■■■■ 4.12
PTPN4-202ENST00000420482 PEG3Q9GZU2 1588 aa40.71■■■■■ 4.11
PTPN4-202ENST00000420482 BAZ1BQ9UIG0 1483 aaKnown RBP40.7■■■■■ 4.11
PTPN4-202ENST00000420482 NESP48681 1621 aa40.59■■■■■ 4.09
PTPN4-202ENST00000420482 MROH2BQ7Z745 1585 aa40.57■■■■■ 4.09
PTPN4-202ENST00000420482 LAMC3Q9Y6N6 1575 aa40.39■■■■■ 4.06
PTPN4-202ENST00000420482 THOC2Q8NI27 1593 aaKnown RBP40.33■■■■■ 4.05
PTPN4-202ENST00000420482 KIF21AQ7Z4S6 1674 aa40.2■■■■■ 4.03
PTPN4-202ENST00000420482 WIZO95785 1651 aa40.11■■■■■ 4.01
PTPN4-202ENST00000420482 PDS5BQ9NTI5 1447 aa40.06■■■■■ 4
PTPN4-202ENST00000420482 CADPSQ9ULU8 1353 aa39.92■■■■□ 3.98
PTPN4-202ENST00000420482 RSF1Q96T23 1441 aaPredicted RBP39.88■■■■□ 3.97
PTPN4-202ENST00000420482 MRC2Q9UBG0 1479 aa39.75■■■■□ 3.95
PTPN4-202ENST00000420482 WDR62O43379 1518 aa39.7■■■■□ 3.95
PTPN4-202ENST00000420482 TOP2AP11388 1531 aaKnown RBP39.7■■■■□ 3.95
PTPN4-202ENST00000420482 CEP164Q9UPV0 1460 aa39.58■■■■□ 3.93
PTPN4-202ENST00000420482 FANCD2Q9BXW9 1451 aa39.49■■■■□ 3.91
PTPN4-202ENST00000420482 CFTRP13569 1480 aa39.49■■■■□ 3.91
PTPN4-202ENST00000420482 PRDM2Q13029 1718 aa39.31■■■■□ 3.88
PTPN4-202ENST00000420482 URB2Q14146 1524 aaKnown RBP39.2■■■■□ 3.87
PTPN4-202ENST00000420482 CCDC88BA6NC98 1476 aa39.2■■■■□ 3.87
PTPN4-202ENST00000420482 TRIM41Q8WV44 630 aa38.92■■■■□ 3.82
PTPN4-202ENST00000420482 OSCARQ8IYS5 282 aa38.83■■■■□ 3.81
PTPN4-202ENST00000420482 IFT140Q96RY7 1462 aa38.79■■■■□ 3.8
PTPN4-202ENST00000420482 ABCC8Q09428 1581 aa38.78■■■■□ 3.8
PTPN4-202ENST00000420482 TOPBP1Q92547 1522 aa38.76■■■■□ 3.8
PTPN4-202ENST00000420482 ZNF608Q9ULD9 1512 aaPredicted RBP38.7■■■■□ 3.79
PTPN4-202ENST00000420482 DNMBPQ6XZF7 1577 aa38.65■■■■□ 3.78
PTPN4-202ENST00000420482 EIF4G3O43432 1585 aaKnown RBP38.59■■■■□ 3.77
PTPN4-202ENST00000420482 RIMBP3CA6NJZ7 1639 aa38.51■■■■□ 3.76
PTPN4-202ENST00000420482 RIMBP3BA6NNM3 1639 aa38.51■■■■□ 3.76
PTPN4-202ENST00000420482 RIMBP3Q9UFD9 1639 aa38.51■■■■□ 3.76
PTPN4-202ENST00000420482 TARBP1Q13395 1621 aaKnown RBP38.49■■■■□ 3.75
PTPN4-202ENST00000420482 SUPT5HO00267 1087 aaKnown RBP38.41■■■■□ 3.74
PTPN4-202ENST00000420482 CHD1O14646 1710 aa38.37■■■■□ 3.73
PTPN4-202ENST00000420482 POLA1P09884 1462 aaPredicted RBP38.35■■■■□ 3.73
PTPN4-202ENST00000420482 ARHGEF11O15085 1522 aa38.34■■■■□ 3.73
PTPN4-202ENST00000420482 AQRO60306 1485 aaKnown RBP eCLIP38.29■■■■□ 3.72
PTPN4-202ENST00000420482 SOGA1O94964 1423 aa38.2■■■■□ 3.71
PTPN4-202ENST00000420482 RAD54L2Q9Y4B4 1467 aa38.16■■■■□ 3.7
PTPN4-202ENST00000420482 WDR97A6NE52 1622 aa38.15■■■■□ 3.7
PTPN4-202ENST00000420482 FGD5Q6ZNL6 1462 aa38.14■■■■□ 3.7
PTPN4-202ENST00000420482 CUX1P39880 1505 aa38.12■■■■□ 3.69
PTPN4-202ENST00000420482 TDRD9Q8NDG6 1382 aaKnown RBP38.03■■■■□ 3.68
PTPN4-202ENST00000420482 FBLN2P98095 1184 aa37.98■■■■□ 3.67
PTPN4-202ENST00000420482 SNAPC4Q5SXM2 1469 aa37.96■■■■□ 3.67
PTPN4-202ENST00000420482 ARAP1Q96P48 1450 aa37.95■■■■□ 3.67
PTPN4-202ENST00000420482 MAGI1Q96QZ7 1491 aaPredicted RBP37.9■■■■□ 3.66
PTPN4-202ENST00000420482 CYB5RLQ6IPT4 315 aa37.89■■■■□ 3.66
PTPN4-202ENST00000420482 CLASP1Q7Z460 1538 aa37.87■■■■□ 3.65
PTPN4-202ENST00000420482 GRIN2BQ13224 1484 aa37.85■■■■□ 3.65
PTPN4-202ENST00000420482 PBRM1Q86U86 1689 aa37.83■■■■□ 3.65
PTPN4-202ENST00000420482 SYNJ1O43426 1573 aa37.83■■■■□ 3.65
PTPN4-202ENST00000420482 CHMP7Q8WUX9 453 aaPredicted RBP37.77■■■■□ 3.64
PTPN4-202ENST00000420482 SYNJ2O15056 1496 aa37.75■■■■□ 3.63
PTPN4-202ENST00000420482 GAPVD1Q14C86 1478 aa37.75■■■■□ 3.63
PTPN4-202ENST00000420482 ABCA10Q8WWZ4 1543 aa37.75■■■■□ 3.63
PTPN4-202ENST00000420482 WRNQ14191 1432 aaPredicted RBP eCLIP37.71■■■■□ 3.63
PTPN4-202ENST00000420482 ABCA5Q8WWZ7 1642 aa37.7■■■■□ 3.63
PTPN4-202ENST00000420482 TOP2BQ02880 1626 aa37.65■■■■□ 3.62
PTPN4-202ENST00000420482 BIVM-ERCC5R4GMW8 1640 aa37.65■■■■□ 3.62
PTPN4-202ENST00000420482 TRHP20396 242 aaPredicted RBP37.49■■■■□ 3.59
PTPN4-202ENST00000420482 ADAMTS12P58397 1594 aa37.41■■■■□ 3.58
PTPN4-202ENST00000420482 GRIN2AQ12879 1464 aa37.38■■■■□ 3.57
PTPN4-202ENST00000420482 ERICH3Q5RHP9 1530 aa37.32■■■■□ 3.57
PTPN4-202ENST00000420482 FHAD1B1AJZ9 1412 aa37.29■■■■□ 3.56
PTPN4-202ENST00000420482 CEP170Q5SW79 1584 aa37.28■■■■□ 3.56
PTPN4-202ENST00000420482 NUP160Q12769 1436 aa37.27■■■■□ 3.56
PTPN4-202ENST00000420482 ERCC6L2Q5T890 1561 aa37.22■■■■□ 3.55
PTPN4-202ENST00000420482 SHROOM2Q13796 1616 aa37.2■■■■□ 3.55
PTPN4-202ENST00000420482 KIF27Q86VH2 1401 aa37■■■■□ 3.51
PTPN4-202ENST00000420482 RUSC2Q8N2Y8 1516 aa36.9■■■■□ 3.5
PTPN4-202ENST00000420482 CUL7Q14999 1698 aa36.86■■■■□ 3.49
PTPN4-202ENST00000420482 IGF1RP08069 1367 aa36.85■■■■□ 3.49
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms