RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NISCHQ9Y2I1 1504 aa56.89■■■■■ 6.7
PTPN4-207ENST00000460162 CCDC180Q9P1Z9 1646 aa51.08■■■■■ 5.77
PTPN4-207ENST00000460162 ABCC9O60706 1549 aa50.56■■■■■ 5.68
PTPN4-207ENST00000460162 RB1CC1Q8TDY2 1594 aa48.39■■■■■ 5.34
PTPN4-207ENST00000460162 NACADO15069 1562 aa48.13■■■■■ 5.3
PTPN4-207ENST00000460162 MYO15BQ96JP2 1530 aa47.62■■■■■ 5.21
PTPN4-207ENST00000460162 DCAF8L2P0C7V8 631 aa47.62■■■■■ 5.21
PTPN4-207ENST00000460162 UNC13AQ9UPW8 1703 aa47.33■■■■■ 5.17
PTPN4-207ENST00000460162 ZCCHC6Q5VYS8 1495 aaKnown RBP47.27■■■■■ 5.16
PTPN4-207ENST00000460162 DCAF1Q9Y4B6 1507 aa47.1■■■■■ 5.13
PTPN4-207ENST00000460162 DNAJC5BQ9UF47 199 aa47.02■■■■■ 5.12
PTPN4-207ENST00000460162 PABPN1Q86U42 306 aaKnown RBP eCLIP46.99■■■■■ 5.11
PTPN4-207ENST00000460162 BICRAQ9NZM4 1560 aa46.93■■■■■ 5.1
PTPN4-207ENST00000460162 SHROOM4Q9ULL8 1493 aa46.48■■■■■ 5.03
PTPN4-207ENST00000460162 SCRIBQ14160 1630 aa46.43■■■■■ 5.02
PTPN4-207ENST00000460162 CC2D2AQ9P2K1 1620 aa45.77■■■■■ 4.92
PTPN4-207ENST00000460162 EIF4G1Q04637 1599 aaKnown RBP45.77■■■■■ 4.92
PTPN4-207ENST00000460162 CECR2Q9BXF3 1484 aa45.55■■■■■ 4.88
PTPN4-207ENST00000460162 NCAPD3P42695 1498 aa44.37■■■■■ 4.69
PTPN4-207ENST00000460162 SMARCA4P51532 1647 aa44.37■■■■■ 4.69
PTPN4-207ENST00000460162 ATAD2BQ9ULI0 1458 aa44.27■■■■■ 4.68
PTPN4-207ENST00000460162 SMARCA2P51531 1590 aa44.23■■■■■ 4.67
PTPN4-207ENST00000460162 BAZ1AQ9NRL2 1556 aaPredicted RBP44.2■■■■■ 4.67
PTPN4-207ENST00000460162 HMGXB3Q12766 1538 aa44.17■■■■■ 4.66
PTPN4-207ENST00000460162 PEG3Q9GZU2 1588 aa43.97■■■■■ 4.63
PTPN4-207ENST00000460162 BAZ1BQ9UIG0 1483 aaKnown RBP43.88■■■■■ 4.61
PTPN4-207ENST00000460162 MROH2BQ7Z745 1585 aa43.8■■■■■ 4.6
PTPN4-207ENST00000460162 ERCC6Q03468 1493 aa43.68■■■■■ 4.58
PTPN4-207ENST00000460162 CUX2O14529 1486 aa43.57■■■■■ 4.57
PTPN4-207ENST00000460162 NESP48681 1621 aa43.51■■■■■ 4.56
PTPN4-207ENST00000460162 LAMC3Q9Y6N6 1575 aa43.4■■■■■ 4.54
PTPN4-207ENST00000460162 WIZO95785 1651 aa43.32■■■■■ 4.53
PTPN4-207ENST00000460162 THOC2Q8NI27 1593 aaKnown RBP43.17■■■■■ 4.5
PTPN4-207ENST00000460162 KIF21AQ7Z4S6 1674 aa43.08■■■■■ 4.49
PTPN4-207ENST00000460162 PDS5BQ9NTI5 1447 aa43.05■■■■■ 4.48
PTPN4-207ENST00000460162 DNAJC5Q9H3Z4 198 aa43.02■■■■■ 4.48
PTPN4-207ENST00000460162 CADPSQ9ULU8 1353 aa42.99■■■■■ 4.47
PTPN4-207ENST00000460162 RSF1Q96T23 1441 aaPredicted RBP42.97■■■■■ 4.47
PTPN4-207ENST00000460162 TOP2AP11388 1531 aaKnown RBP42.86■■■■■ 4.45
PTPN4-207ENST00000460162 MRC2Q9UBG0 1479 aa42.7■■■■■ 4.43
PTPN4-207ENST00000460162 WDR62O43379 1518 aa42.64■■■■■ 4.42
PTPN4-207ENST00000460162 CFTRP13569 1480 aa42.62■■■■■ 4.41
PTPN4-207ENST00000460162 CEP164Q9UPV0 1460 aa42.59■■■■■ 4.41
PTPN4-207ENST00000460162 FANCD2Q9BXW9 1451 aa42.54■■■■■ 4.4
PTPN4-207ENST00000460162 PRDM2Q13029 1718 aa42.39■■■■■ 4.38
PTPN4-207ENST00000460162 CCDC88BA6NC98 1476 aa42.25■■■■■ 4.35
PTPN4-207ENST00000460162 URB2Q14146 1524 aaKnown RBP42.16■■■■■ 4.34
PTPN4-207ENST00000460162 TOPBP1Q92547 1522 aa41.78■■■■■ 4.28
PTPN4-207ENST00000460162 ABCC8Q09428 1581 aa41.75■■■■■ 4.27
PTPN4-207ENST00000460162 IFT140Q96RY7 1462 aa41.72■■■■■ 4.27
PTPN4-207ENST00000460162 DNMBPQ6XZF7 1577 aa41.71■■■■■ 4.27
PTPN4-207ENST00000460162 ZNF608Q9ULD9 1512 aaPredicted RBP41.56■■■■■ 4.24
PTPN4-207ENST00000460162 EIF4G3O43432 1585 aaKnown RBP41.47■■■■■ 4.23
PTPN4-207ENST00000460162 OSCARQ8IYS5 282 aa41.46■■■■■ 4.23
PTPN4-207ENST00000460162 TARBP1Q13395 1621 aaKnown RBP41.43■■■■■ 4.22
PTPN4-207ENST00000460162 POLA1P09884 1462 aaPredicted RBP41.37■■■■■ 4.21
PTPN4-207ENST00000460162 TRIM41Q8WV44 630 aa41.2■■■■■ 4.19
PTPN4-207ENST00000460162 AQRO60306 1485 aaKnown RBP eCLIP41.18■■■■■ 4.18
PTPN4-207ENST00000460162 CUX1P39880 1505 aa41.16■■■■■ 4.18
PTPN4-207ENST00000460162 FGD5Q6ZNL6 1462 aa41.15■■■■■ 4.18
PTPN4-207ENST00000460162 WDR97A6NE52 1622 aa41.14■■■■■ 4.18
PTPN4-207ENST00000460162 RAD54L2Q9Y4B4 1467 aa41.14■■■■■ 4.18
PTPN4-207ENST00000460162 SUPT5HO00267 1087 aaKnown RBP41.13■■■■■ 4.17
PTPN4-207ENST00000460162 SOGA1O94964 1423 aa41.11■■■■■ 4.17
PTPN4-207ENST00000460162 CHD1O14646 1710 aa41.1■■■■■ 4.17
PTPN4-207ENST00000460162 RIMBP3CA6NJZ7 1639 aa41.04■■■■■ 4.16
PTPN4-207ENST00000460162 RIMBP3BA6NNM3 1639 aa41.04■■■■■ 4.16
PTPN4-207ENST00000460162 RIMBP3Q9UFD9 1639 aa41.04■■■■■ 4.16
PTPN4-207ENST00000460162 TDRD9Q8NDG6 1382 aaKnown RBP40.96■■■■■ 4.15
PTPN4-207ENST00000460162 ARHGEF11O15085 1522 aa40.93■■■■■ 4.14
PTPN4-207ENST00000460162 SNAPC4Q5SXM2 1469 aa40.86■■■■■ 4.13
PTPN4-207ENST00000460162 MAGI1Q96QZ7 1491 aaPredicted RBP40.82■■■■■ 4.12
PTPN4-207ENST00000460162 GRIN2BQ13224 1484 aa40.8■■■■■ 4.12
PTPN4-207ENST00000460162 FBLN2P98095 1184 aa40.77■■■■■ 4.12
PTPN4-207ENST00000460162 PBRM1Q86U86 1689 aa40.75■■■■■ 4.11
PTPN4-207ENST00000460162 ABCA10Q8WWZ4 1543 aa40.73■■■■■ 4.11
PTPN4-207ENST00000460162 ABCA5Q8WWZ7 1642 aa40.71■■■■■ 4.11
PTPN4-207ENST00000460162 BIVM-ERCC5R4GMW8 1640 aa40.67■■■■■ 4.1
PTPN4-207ENST00000460162 GAPVD1Q14C86 1478 aa40.67■■■■■ 4.1
PTPN4-207ENST00000460162 SYNJ2O15056 1496 aa40.64■■■■■ 4.1
PTPN4-207ENST00000460162 TOP2BQ02880 1626 aa40.64■■■■■ 4.1
PTPN4-207ENST00000460162 SYNJ1O43426 1573 aa40.64■■■■■ 4.1
PTPN4-207ENST00000460162 CLASP1Q7Z460 1538 aa40.63■■■■■ 4.1
PTPN4-207ENST00000460162 WRNQ14191 1432 aaPredicted RBP eCLIP40.58■■■■■ 4.09
PTPN4-207ENST00000460162 CHMP7Q8WUX9 453 aaPredicted RBP40.57■■■■■ 4.09
PTPN4-207ENST00000460162 ARAP1Q96P48 1450 aa40.52■■■■■ 4.08
PTPN4-207ENST00000460162 CYB5RLQ6IPT4 315 aa40.42■■■■■ 4.06
PTPN4-207ENST00000460162 ADAMTS12P58397 1594 aa40.38■■■■■ 4.05
PTPN4-207ENST00000460162 GRIN2AQ12879 1464 aa40.29■■■■■ 4.04
PTPN4-207ENST00000460162 ERICH3Q5RHP9 1530 aa40.25■■■■■ 4.03
PTPN4-207ENST00000460162 FHAD1B1AJZ9 1412 aa40.18■■■■■ 4.02
PTPN4-207ENST00000460162 NUP160Q12769 1436 aa40.15■■■■■ 4.02
PTPN4-207ENST00000460162 CEP170Q5SW79 1584 aa40.14■■■■■ 4.02
PTPN4-207ENST00000460162 SHROOM2Q13796 1616 aa40■■■■□ 3.99
PTPN4-207ENST00000460162 ERCC6L2Q5T890 1561 aa39.93■■■■□ 3.98
PTPN4-207ENST00000460162 TRHP20396 242 aaPredicted RBP39.88■■■■□ 3.97
PTPN4-207ENST00000460162 RUSC2Q8N2Y8 1516 aa39.81■■■■□ 3.96
PTPN4-207ENST00000460162 KIF27Q86VH2 1401 aa39.79■■■■□ 3.96
PTPN4-207ENST00000460162 CUL7Q14999 1698 aa39.78■■■■□ 3.96
PTPN4-207ENST00000460162 PRG4Q92954 1404 aaPredicted RBP39.65■■■■□ 3.94
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms