RNA–Protein interactions for RNA: ENST00000570727.5

NDE1-203, Transcript of nudE neurodevelopment protein 1, humanhuman

TSL 4

Gene NDE1, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-203ENST00000570727 NISCHQ9Y2I1 1504 aa37.07■■■■□ 3.53
NDE1-203ENST00000570727 ABCC9O60706 1549 aa33.21■■■□□ 2.91
NDE1-203ENST00000570727 CCDC180Q9P1Z9 1646 aa33.2■■■□□ 2.9
NDE1-203ENST00000570727 RB1CC1Q8TDY2 1594 aa31.6■■■□□ 2.65
NDE1-203ENST00000570727 NACADO15069 1562 aa31.4■■■□□ 2.62
NDE1-203ENST00000570727 DCAF8L2P0C7V8 631 aa31.3■■■□□ 2.6
NDE1-203ENST00000570727 DNAJC5BQ9UF47 199 aa31.23■■■□□ 2.59
NDE1-203ENST00000570727 MYO15BQ96JP2 1530 aa30.98■■■□□ 2.55
NDE1-203ENST00000570727 PABPN1Q86U42 306 aaKnown RBP eCLIP30.97■■■□□ 2.55
NDE1-203ENST00000570727 UNC13AQ9UPW8 1703 aa30.94■■■□□ 2.54
NDE1-203ENST00000570727 BICRAQ9NZM4 1560 aa30.74■■■□□ 2.51
NDE1-203ENST00000570727 ZCCHC6Q5VYS8 1495 aaKnown RBP30.7■■■□□ 2.51
NDE1-203ENST00000570727 DCAF1Q9Y4B6 1507 aa30.61■■■□□ 2.49
NDE1-203ENST00000570727 SCRIBQ14160 1630 aa30.26■■■□□ 2.44
NDE1-203ENST00000570727 SHROOM4Q9ULL8 1493 aa30.24■■■□□ 2.43
NDE1-203ENST00000570727 CC2D2AQ9P2K1 1620 aa30■■■□□ 2.39
NDE1-203ENST00000570727 EIF4G1Q04637 1599 aaKnown RBP29.94■■■□□ 2.38
NDE1-203ENST00000570727 CECR2Q9BXF3 1484 aa29.9■■■□□ 2.38
NDE1-203ENST00000570727 NCAPD3P42695 1498 aa29.03■■■□□ 2.24
NDE1-203ENST00000570727 ATAD2BQ9ULI0 1458 aa28.93■■■□□ 2.22
NDE1-203ENST00000570727 SMARCA4P51532 1647 aa28.89■■■□□ 2.22
NDE1-203ENST00000570727 SMARCA2P51531 1590 aa28.81■■■□□ 2.2
NDE1-203ENST00000570727 HMGXB3Q12766 1538 aa28.76■■■□□ 2.19
NDE1-203ENST00000570727 BAZ1AQ9NRL2 1556 aaPredicted RBP28.74■■■□□ 2.19
NDE1-203ENST00000570727 ERCC6Q03468 1493 aa28.62■■■□□ 2.17
NDE1-203ENST00000570727 PEG3Q9GZU2 1588 aa28.62■■■□□ 2.17
NDE1-203ENST00000570727 BAZ1BQ9UIG0 1483 aaKnown RBP28.61■■■□□ 2.17
NDE1-203ENST00000570727 DNAJC5Q9H3Z4 198 aa28.61■■■□□ 2.17
NDE1-203ENST00000570727 MROH2BQ7Z745 1585 aa28.58■■■□□ 2.17
NDE1-203ENST00000570727 CUX2O14529 1486 aa28.58■■■□□ 2.17
NDE1-203ENST00000570727 NESP48681 1621 aa28.57■■■□□ 2.16
NDE1-203ENST00000570727 LAMC3Q9Y6N6 1575 aa28.33■■■□□ 2.12
NDE1-203ENST00000570727 WIZO95785 1651 aa28.24■■■□□ 2.11
NDE1-203ENST00000570727 THOC2Q8NI27 1593 aaKnown RBP28.22■■■□□ 2.11
NDE1-203ENST00000570727 PDS5BQ9NTI5 1447 aa28.17■■■□□ 2.1
NDE1-203ENST00000570727 KIF21AQ7Z4S6 1674 aa28.16■■■□□ 2.1
NDE1-203ENST00000570727 CADPSQ9ULU8 1353 aa28.14■■■□□ 2.1
NDE1-203ENST00000570727 RSF1Q96T23 1441 aaPredicted RBP28.01■■■□□ 2.07
NDE1-203ENST00000570727 MRC2Q9UBG0 1479 aa27.91■■■□□ 2.06
NDE1-203ENST00000570727 WDR62O43379 1518 aa27.84■■■□□ 2.05
NDE1-203ENST00000570727 TOP2AP11388 1531 aaKnown RBP27.84■■■□□ 2.05
NDE1-203ENST00000570727 CFTRP13569 1480 aa27.83■■■□□ 2.04
NDE1-203ENST00000570727 FANCD2Q9BXW9 1451 aa27.8■■■□□ 2.04
NDE1-203ENST00000570727 CEP164Q9UPV0 1460 aa27.8■■■□□ 2.04
NDE1-203ENST00000570727 URB2Q14146 1524 aaKnown RBP27.59■■■□□ 2.01
NDE1-203ENST00000570727 CCDC88BA6NC98 1476 aa27.57■■■□□ 2
NDE1-203ENST00000570727 PRDM2Q13029 1718 aa27.51■■□□□ 1.99
NDE1-203ENST00000570727 OSCARQ8IYS5 282 aa27.34■■□□□ 1.97
NDE1-203ENST00000570727 TRIM41Q8WV44 630 aa27.33■■□□□ 1.97
NDE1-203ENST00000570727 TOPBP1Q92547 1522 aa27.28■■□□□ 1.96
NDE1-203ENST00000570727 IFT140Q96RY7 1462 aa27.25■■□□□ 1.95
NDE1-203ENST00000570727 ZNF608Q9ULD9 1512 aaPredicted RBP27.25■■□□□ 1.95
NDE1-203ENST00000570727 ABCC8Q09428 1581 aa27.21■■□□□ 1.95
NDE1-203ENST00000570727 DNMBPQ6XZF7 1577 aa27.16■■□□□ 1.94
NDE1-203ENST00000570727 TARBP1Q13395 1621 aaKnown RBP27.05■■□□□ 1.92
NDE1-203ENST00000570727 EIF4G3O43432 1585 aaKnown RBP27.05■■□□□ 1.92
NDE1-203ENST00000570727 AQRO60306 1485 aaKnown RBP eCLIP27.02■■□□□ 1.92
NDE1-203ENST00000570727 POLA1P09884 1462 aaPredicted RBP27■■□□□ 1.91
NDE1-203ENST00000570727 RIMBP3CA6NJZ7 1639 aa26.95■■□□□ 1.91
NDE1-203ENST00000570727 RIMBP3BA6NNM3 1639 aa26.95■■□□□ 1.91
NDE1-203ENST00000570727 RIMBP3Q9UFD9 1639 aa26.95■■□□□ 1.91
NDE1-203ENST00000570727 RAD54L2Q9Y4B4 1467 aa26.93■■□□□ 1.9
NDE1-203ENST00000570727 SOGA1O94964 1423 aa26.9■■□□□ 1.9
NDE1-203ENST00000570727 CHD1O14646 1710 aa26.87■■□□□ 1.89
NDE1-203ENST00000570727 ARHGEF11O15085 1522 aa26.85■■□□□ 1.89
NDE1-203ENST00000570727 TDRD9Q8NDG6 1382 aaKnown RBP26.85■■□□□ 1.89
NDE1-203ENST00000570727 CUX1P39880 1505 aa26.84■■□□□ 1.89
NDE1-203ENST00000570727 FGD5Q6ZNL6 1462 aa26.83■■□□□ 1.89
NDE1-203ENST00000570727 FBLN2P98095 1184 aa26.81■■□□□ 1.88
NDE1-203ENST00000570727 SUPT5HO00267 1087 aaKnown RBP26.8■■□□□ 1.88
NDE1-203ENST00000570727 WDR97A6NE52 1622 aa26.72■■□□□ 1.87
NDE1-203ENST00000570727 CYB5RLQ6IPT4 315 aa26.71■■□□□ 1.87
NDE1-203ENST00000570727 SNAPC4Q5SXM2 1469 aa26.7■■□□□ 1.87
NDE1-203ENST00000570727 GRIN2BQ13224 1484 aa26.63■■□□□ 1.85
NDE1-203ENST00000570727 CHMP7Q8WUX9 453 aaPredicted RBP26.63■■□□□ 1.85
NDE1-203ENST00000570727 MAGI1Q96QZ7 1491 aaPredicted RBP26.62■■□□□ 1.85
NDE1-203ENST00000570727 ARAP1Q96P48 1450 aa26.61■■□□□ 1.85
NDE1-203ENST00000570727 GAPVD1Q14C86 1478 aa26.56■■□□□ 1.84
NDE1-203ENST00000570727 CLASP1Q7Z460 1538 aa26.56■■□□□ 1.84
NDE1-203ENST00000570727 SYNJ2O15056 1496 aa26.54■■□□□ 1.84
NDE1-203ENST00000570727 ABCA10Q8WWZ4 1543 aa26.54■■□□□ 1.84
NDE1-203ENST00000570727 PBRM1Q86U86 1689 aa26.52■■□□□ 1.84
NDE1-203ENST00000570727 SYNJ1O43426 1573 aa26.51■■□□□ 1.83
NDE1-203ENST00000570727 ABCA5Q8WWZ7 1642 aa26.48■■□□□ 1.83
NDE1-203ENST00000570727 WRNQ14191 1432 aaPredicted RBP eCLIP26.43■■□□□ 1.82
NDE1-203ENST00000570727 TOP2BQ02880 1626 aa26.4■■□□□ 1.82
NDE1-203ENST00000570727 BIVM-ERCC5R4GMW8 1640 aa26.39■■□□□ 1.82
NDE1-203ENST00000570727 TRHP20396 242 aaPredicted RBP26.36■■□□□ 1.81
NDE1-203ENST00000570727 GRIN2AQ12879 1464 aa26.3■■□□□ 1.8
NDE1-203ENST00000570727 ADAMTS12P58397 1594 aa26.26■■□□□ 1.79
NDE1-203ENST00000570727 FHAD1B1AJZ9 1412 aa26.22■■□□□ 1.79
NDE1-203ENST00000570727 NUP160Q12769 1436 aa26.22■■□□□ 1.79
NDE1-203ENST00000570727 CEP170Q5SW79 1584 aa26.21■■□□□ 1.79
NDE1-203ENST00000570727 ERICH3Q5RHP9 1530 aa26.19■■□□□ 1.78
NDE1-203ENST00000570727 ERCC6L2Q5T890 1561 aa26.18■■□□□ 1.78
NDE1-203ENST00000570727 SHROOM2Q13796 1616 aa26.1■■□□□ 1.77
NDE1-203ENST00000570727 JPH4Q96JJ6 628 aa26.01■■□□□ 1.75
NDE1-203ENST00000570727 PRG4Q92954 1404 aaPredicted RBP25.97■■□□□ 1.75
NDE1-203ENST00000570727 IGF1RP08069 1367 aa25.94■■□□□ 1.74
NDE1-203ENST00000570727 RUSC2Q8N2Y8 1516 aa25.88■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms