Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 DUX4L7-201ENST00000630678 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 DUX4L5-201ENST00000630834 1275 ntBASIC28.56■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 BID-212ENST00000614949 1988 ntTSL 5 BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AL355802.2-201ENST00000402069 882 ntBASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CD99P1-205ENST00000527459 561 ntBASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ASL-203ENST00000380839 1765 ntTSL 5 BASIC28.54■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
SENP3-EIF4A1A0A087X0R7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AP005435.1-201ENST00000529293 1178 ntBASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 SMUG1P1-201ENST00000590640 811 ntBASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AC104771.1-201ENST00000603335 964 ntBASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AP004607.7-201ENST00000527152 1677 ntBASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC28.51■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC28.5■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 IGHV3-19-201ENST00000521488 291 ntBASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 MIR6084-201ENST00000622012 110 ntBASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC28.49■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC28.48■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC28.47■■■□□ 2.15
SENP3-EIF4A1A0A087X0R7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC28.47■■■□□ 2.15
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms