RNA–Protein interactions for RNA: ENST00000334895.9

TPM1-204, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,637 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-204ENST00000334895 NISCHQ9Y2I1 1504 aa50.58■■■■■ 5.69
TPM1-204ENST00000334895 CCDC180Q9P1Z9 1646 aa44.5■■■■■ 4.71
TPM1-204ENST00000334895 ABCC9O60706 1549 aa43.09■■■■■ 4.49
TPM1-204ENST00000334895 ZCCHC6Q5VYS8 1495 aaKnown RBP42.36■■■■■ 4.37
TPM1-204ENST00000334895 DCAF1Q9Y4B6 1507 aa41.85■■■■■ 4.29
TPM1-204ENST00000334895 DCAF8L2P0C7V8 631 aa41.83■■■■■ 4.29
TPM1-204ENST00000334895 MYO15BQ96JP2 1530 aa41.65■■■■■ 4.26
TPM1-204ENST00000334895 NACADO15069 1562 aa41.59■■■■■ 4.25
TPM1-204ENST00000334895 RB1CC1Q8TDY2 1594 aa41.57■■■■■ 4.24
TPM1-204ENST00000334895 UNC13AQ9UPW8 1703 aa40.84■■■■■ 4.13
TPM1-204ENST00000334895 SCRIBQ14160 1630 aa40.75■■■■■ 4.11
TPM1-204ENST00000334895 SHROOM4Q9ULL8 1493 aa40.61■■■■■ 4.09
TPM1-204ENST00000334895 BICRAQ9NZM4 1560 aa40.35■■■■■ 4.05
TPM1-204ENST00000334895 PABPN1Q86U42 306 aaKnown RBP eCLIP40.27■■■■■ 4.04
TPM1-204ENST00000334895 CECR2Q9BXF3 1484 aa39.36■■■■□ 3.89
TPM1-204ENST00000334895 DNAJC5BQ9UF47 199 aa39.34■■■■□ 3.89
TPM1-204ENST00000334895 EIF4G1Q04637 1599 aaKnown RBP39.24■■■■□ 3.87
TPM1-204ENST00000334895 BAZ1AQ9NRL2 1556 aaPredicted RBP39.1■■■■□ 3.85
TPM1-204ENST00000334895 SMARCA4P51532 1647 aa39.06■■■■□ 3.84
TPM1-204ENST00000334895 MROH2BQ7Z745 1585 aa39.04■■■■□ 3.84
TPM1-204ENST00000334895 CC2D2AQ9P2K1 1620 aa39.03■■■■□ 3.84
TPM1-204ENST00000334895 RSF1Q96T23 1441 aaPredicted RBP38.93■■■■□ 3.82
TPM1-204ENST00000334895 WIZO95785 1651 aa38.68■■■■□ 3.78
TPM1-204ENST00000334895 SUPT5HO00267 1087 aaKnown RBP38.67■■■■□ 3.78
TPM1-204ENST00000334895 PEG3Q9GZU2 1588 aa38.64■■■■□ 3.78
TPM1-204ENST00000334895 ATAD2BQ9ULI0 1458 aa38.58■■■■□ 3.77
TPM1-204ENST00000334895 SMARCA2P51531 1590 aa38.53■■■■□ 3.76
TPM1-204ENST00000334895 NCAPD3P42695 1498 aa38.38■■■■□ 3.73
TPM1-204ENST00000334895 BAZ1BQ9UIG0 1483 aaKnown RBP38.29■■■■□ 3.72
TPM1-204ENST00000334895 HMGXB3Q12766 1538 aa38.29■■■■□ 3.72
TPM1-204ENST00000334895 TOP2AP11388 1531 aaKnown RBP38.28■■■■□ 3.72
TPM1-204ENST00000334895 CCDC88BA6NC98 1476 aa37.85■■■■□ 3.65
TPM1-204ENST00000334895 NESP48681 1621 aa37.41■■■■□ 3.58
TPM1-204ENST00000334895 CFTRP13569 1480 aa37.32■■■■□ 3.57
TPM1-204ENST00000334895 LAMC3Q9Y6N6 1575 aa37.32■■■■□ 3.57
TPM1-204ENST00000334895 CADPSQ9ULU8 1353 aa37.31■■■■□ 3.56
TPM1-204ENST00000334895 PRDM2Q13029 1718 aa37.13■■■■□ 3.53
TPM1-204ENST00000334895 ERCC6Q03468 1493 aa37.09■■■■□ 3.53
TPM1-204ENST00000334895 KIF21AQ7Z4S6 1674 aa37.07■■■■□ 3.52
TPM1-204ENST00000334895 PDS5BQ9NTI5 1447 aa36.98■■■■□ 3.51
TPM1-204ENST00000334895 FANCD2Q9BXW9 1451 aa36.91■■■■□ 3.5
TPM1-204ENST00000334895 ABCC8Q09428 1581 aa36.81■■■■□ 3.48
TPM1-204ENST00000334895 THOC2Q8NI27 1593 aaKnown RBP36.8■■■■□ 3.48
TPM1-204ENST00000334895 CEP164Q9UPV0 1460 aa36.76■■■■□ 3.48
TPM1-204ENST00000334895 CHIC1Q5VXU3 224 aa36.68■■■■□ 3.46
TPM1-204ENST00000334895 WRNQ14191 1432 aaPredicted RBP eCLIP36.64■■■■□ 3.46
TPM1-204ENST00000334895 MRC2Q9UBG0 1479 aa36.63■■■■□ 3.45
TPM1-204ENST00000334895 SYNJ1O43426 1573 aa36.57■■■■□ 3.45
TPM1-204ENST00000334895 CUX1P39880 1505 aa36.56■■■■□ 3.44
TPM1-204ENST00000334895 CUX2O14529 1486 aa36.55■■■■□ 3.44
TPM1-204ENST00000334895 WDR62O43379 1518 aa36.54■■■■□ 3.44
TPM1-204ENST00000334895 URB2Q14146 1524 aaKnown RBP36.52■■■■□ 3.44
TPM1-204ENST00000334895 TOP2BQ02880 1626 aa36.48■■■■□ 3.43
TPM1-204ENST00000334895 BIVM-ERCC5R4GMW8 1640 aa36.48■■■■□ 3.43
TPM1-204ENST00000334895 DNMBPQ6XZF7 1577 aa36.46■■■■□ 3.43
TPM1-204ENST00000334895 TOPBP1Q92547 1522 aa36.45■■■■□ 3.43
TPM1-204ENST00000334895 TRIM41Q8WV44 630 aa36.42■■■■□ 3.42
TPM1-204ENST00000334895 FGD5Q6ZNL6 1462 aa36.26■■■■□ 3.4
TPM1-204ENST00000334895 POLA1P09884 1462 aaPredicted RBP36.21■■■■□ 3.39
TPM1-204ENST00000334895 RAD54L2Q9Y4B4 1467 aa36.07■■■■□ 3.36
TPM1-204ENST00000334895 SOGA1O94964 1423 aa36.03■■■■□ 3.36
TPM1-204ENST00000334895 TARBP1Q13395 1621 aaKnown RBP36■■■■□ 3.35
TPM1-204ENST00000334895 WDR97A6NE52 1622 aa35.95■■■■□ 3.34
TPM1-204ENST00000334895 IFT140Q96RY7 1462 aa35.94■■■■□ 3.34
TPM1-204ENST00000334895 ABCA10Q8WWZ4 1543 aa35.94■■■■□ 3.34
TPM1-204ENST00000334895 RUSC2Q8N2Y8 1516 aa35.87■■■■□ 3.33
TPM1-204ENST00000334895 ZNF608Q9ULD9 1512 aaPredicted RBP35.82■■■■□ 3.33
TPM1-204ENST00000334895 KIF27Q86VH2 1401 aa35.77■■■■□ 3.32
TPM1-204ENST00000334895 EIF4G3O43432 1585 aaKnown RBP35.75■■■■□ 3.31
TPM1-204ENST00000334895 TDRD9Q8NDG6 1382 aaKnown RBP35.74■■■■□ 3.31
TPM1-204ENST00000334895 ABCA5Q8WWZ7 1642 aa35.74■■■■□ 3.31
TPM1-204ENST00000334895 FAM9AQ8IZU1 332 aaPredicted RBP35.72■■■■□ 3.31
TPM1-204ENST00000334895 EEA1Q15075 1411 aa35.71■■■■□ 3.31
TPM1-204ENST00000334895 AQRO60306 1485 aaKnown RBP eCLIP35.66■■■■□ 3.31e-12■■■■□ 23
TPM1-204ENST00000334895 GAPVD1Q14C86 1478 aa35.64■■■■□ 3.3
TPM1-204ENST00000334895 CSRNP3Q8WYN3 585 aa35.55■■■■□ 3.28
TPM1-204ENST00000334895 IGF1RP08069 1367 aa35.55■■■■□ 3.28
TPM1-204ENST00000334895 PBRM1Q86U86 1689 aa35.54■■■■□ 3.28
TPM1-204ENST00000334895 ERICH3Q5RHP9 1530 aa35.5■■■■□ 3.27
TPM1-204ENST00000334895 GRIN2BQ13224 1484 aa35.48■■■■□ 3.27
TPM1-204ENST00000334895 PRXQ9BXM0 1461 aa35.38■■■■□ 3.25
TPM1-204ENST00000334895 CUL7Q14999 1698 aa35.37■■■■□ 3.25
TPM1-204ENST00000334895 SNAPC4Q5SXM2 1469 aa35.34■■■■□ 3.25
TPM1-204ENST00000334895 KIF21BO75037 1637 aa35.34■■■■□ 3.25
TPM1-204ENST00000334895 CARMIL1Q5VZK9 1371 aa35.33■■■■□ 3.25
TPM1-204ENST00000334895 ADAMTS12P58397 1594 aa35.32■■■■□ 3.24
TPM1-204ENST00000334895 CHD1O14646 1710 aa35.31■■■■□ 3.24
TPM1-204ENST00000334895 MAGI1Q96QZ7 1491 aaPredicted RBP35.28■■■■□ 3.24
TPM1-204ENST00000334895 RAPGEF2Q9Y4G8 1499 aa35.26■■■■□ 3.24
TPM1-204ENST00000334895 DNAJC5Q9H3Z4 198 aa35.26■■■■□ 3.24
TPM1-204ENST00000334895 FHAD1B1AJZ9 1412 aa35.25■■■■□ 3.23
TPM1-204ENST00000334895 LOC105371045A0A1W2PR82 267 aa35.21■■■■□ 3.23
TPM1-204ENST00000334895 EHMT2Q96KQ7 1210 aa35.21■■■■□ 3.23
TPM1-204ENST00000334895 GOLGA3Q08378 1498 aa35.18■■■■□ 3.22
TPM1-204ENST00000334895 SYNJ2O15056 1496 aa35.15■■■■□ 3.22
TPM1-204ENST00000334895 FBLN2P98095 1184 aa35.12■■■■□ 3.21
TPM1-204ENST00000334895 GRIN2AQ12879 1464 aa35.06■■■■□ 3.2
TPM1-204ENST00000334895 OSCARQ8IYS5 282 aa35.04■■■■□ 3.2
TPM1-204ENST00000334895 CHMP7Q8WUX9 453 aaPredicted RBP35.03■■■■□ 3.2
TPM1-204ENST00000334895 UBTFP17480 764 aaKnown RBP34.97■■■■□ 3.19
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms