RNA–Protein interactions for RNA: ENST00000346495.6

TSPAN3-202, Transcript of tetraspanin 3, humanhuman

TSL 2 BASIC

Gene TSPAN3, Length 1,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-202ENST00000346495 NISCHQ9Y2I1 1504 aa48.74■■■■■ 5.39
TSPAN3-202ENST00000346495 CCDC180Q9P1Z9 1646 aa42.59■■■■■ 4.41
TSPAN3-202ENST00000346495 ZCCHC6Q5VYS8 1495 aaKnown RBP40.94■■■■■ 4.14
TSPAN3-202ENST00000346495 DCAF1Q9Y4B6 1507 aa40.35■■■■■ 4.05
TSPAN3-202ENST00000346495 DCAF8L2P0C7V8 631 aa40.18■■■■■ 4.02
TSPAN3-202ENST00000346495 ABCC9O60706 1549 aa40.18■■■■■ 4.02
TSPAN3-202ENST00000346495 MYO15BQ96JP2 1530 aa39.89■■■■□ 3.98
TSPAN3-202ENST00000346495 SHROOM4Q9ULL8 1493 aa39.65■■■■□ 3.94
TSPAN3-202ENST00000346495 NACADO15069 1562 aa39.65■■■■□ 3.94
TSPAN3-202ENST00000346495 RB1CC1Q8TDY2 1594 aa39.31■■■■□ 3.88
TSPAN3-202ENST00000346495 SCRIBQ14160 1630 aa39.08■■■■□ 3.85
TSPAN3-202ENST00000346495 UNC13AQ9UPW8 1703 aa38.52■■■■□ 3.76
TSPAN3-202ENST00000346495 SUPT5HO00267 1087 aaKnown RBP38.15■■■■□ 3.7
TSPAN3-202ENST00000346495 BICRAQ9NZM4 1560 aa38.08■■■■□ 3.69
TSPAN3-202ENST00000346495 PABPN1Q86U42 306 aaKnown RBP eCLIP37.85■■■■□ 3.65
TSPAN3-202ENST00000346495 CECR2Q9BXF3 1484 aa37.82■■■■□ 3.64
TSPAN3-202ENST00000346495 RSF1Q96T23 1441 aaPredicted RBP37.77■■■■□ 3.64
TSPAN3-202ENST00000346495 BAZ1AQ9NRL2 1556 aaPredicted RBP37.66■■■■□ 3.62
TSPAN3-202ENST00000346495 MROH2BQ7Z745 1585 aa37.63■■■■□ 3.61
TSPAN3-202ENST00000346495 SMARCA4P51532 1647 aa37.49■■■■□ 3.59
TSPAN3-202ENST00000346495 WIZO95785 1651 aa37.34■■■■□ 3.57
TSPAN3-202ENST00000346495 PEG3Q9GZU2 1588 aa37.04■■■■□ 3.52
TSPAN3-202ENST00000346495 TOP2AP11388 1531 aaKnown RBP36.98■■■■□ 3.51
TSPAN3-202ENST00000346495 EIF4G1Q04637 1599 aaKnown RBP36.94■■■■□ 3.5
TSPAN3-202ENST00000346495 SMARCA2P51531 1590 aa36.88■■■■□ 3.49
TSPAN3-202ENST00000346495 ATAD2BQ9ULI0 1458 aa36.85■■■■□ 3.49
TSPAN3-202ENST00000346495 BAZ1BQ9UIG0 1483 aaKnown RBP36.66■■■■□ 3.46
TSPAN3-202ENST00000346495 CCDC88BA6NC98 1476 aa36.56■■■■□ 3.44
TSPAN3-202ENST00000346495 NCAPD3P42695 1498 aa36.56■■■■□ 3.44
TSPAN3-202ENST00000346495 HMGXB3Q12766 1538 aa36.53■■■■□ 3.44
TSPAN3-202ENST00000346495 CHIC1Q5VXU3 224 aa36.52■■■■□ 3.44
TSPAN3-202ENST00000346495 CC2D2AQ9P2K1 1620 aa36.4■■■■□ 3.42
TSPAN3-202ENST00000346495 TRIM41Q8WV44 630 aa35.91■■■■□ 3.34
TSPAN3-202ENST00000346495 ABCC8Q09428 1581 aa35.77■■■■□ 3.32
TSPAN3-202ENST00000346495 CFTRP13569 1480 aa35.73■■■■□ 3.31
TSPAN3-202ENST00000346495 PRDM2Q13029 1718 aa35.64■■■■□ 3.3
TSPAN3-202ENST00000346495 CADPSQ9ULU8 1353 aa35.61■■■■□ 3.29
TSPAN3-202ENST00000346495 WRNQ14191 1432 aaPredicted RBP eCLIP35.57■■■■□ 3.28
TSPAN3-202ENST00000346495 SYNJ1O43426 1573 aa35.42■■■■□ 3.26
TSPAN3-202ENST00000346495 DNAJC5BQ9UF47 199 aa35.39■■■■□ 3.26
TSPAN3-202ENST00000346495 LAMC3Q9Y6N6 1575 aa35.35■■■■□ 3.25
TSPAN3-202ENST00000346495 TOP2BQ02880 1626 aa35.32■■■■□ 3.24
TSPAN3-202ENST00000346495 BIVM-ERCC5R4GMW8 1640 aa35.3■■■■□ 3.24
TSPAN3-202ENST00000346495 NESP48681 1621 aa35.26■■■■□ 3.24
TSPAN3-202ENST00000346495 FANCD2Q9BXW9 1451 aa35.21■■■■□ 3.23
TSPAN3-202ENST00000346495 FAM9AQ8IZU1 332 aaPredicted RBP35.2■■■■□ 3.23
TSPAN3-202ENST00000346495 CUX1P39880 1505 aa35.19■■■■□ 3.22
TSPAN3-202ENST00000346495 EEA1Q15075 1411 aa35.1■■■■□ 3.21
TSPAN3-202ENST00000346495 LOC105371045A0A1W2PR82 267 aa35.09■■■■□ 3.21
TSPAN3-202ENST00000346495 SOGA1O94964 1423 aa35.07■■■■□ 3.21
TSPAN3-202ENST00000346495 PDS5BQ9NTI5 1447 aa35.05■■■■□ 3.2
TSPAN3-202ENST00000346495 CEP164Q9UPV0 1460 aa35.01■■■■□ 3.2
TSPAN3-202ENST00000346495 RUSC2Q8N2Y8 1516 aa34.94■■■■□ 3.18
TSPAN3-202ENST00000346495 DNMBPQ6XZF7 1577 aa34.93■■■■□ 3.18
TSPAN3-202ENST00000346495 KIF21AQ7Z4S6 1674 aa34.9■■■■□ 3.18
TSPAN3-202ENST00000346495 CSRNP3Q8WYN3 585 aa34.85■■■■□ 3.17
TSPAN3-202ENST00000346495 TOPBP1Q92547 1522 aa34.84■■■■□ 3.17
TSPAN3-202ENST00000346495 FGD5Q6ZNL6 1462 aa34.82■■■■□ 3.16
TSPAN3-202ENST00000346495 URB2Q14146 1524 aaKnown RBP34.77■■■■□ 3.16
TSPAN3-202ENST00000346495 KIF27Q86VH2 1401 aa34.69■■■■□ 3.14
TSPAN3-202ENST00000346495 EHMT2Q96KQ7 1210 aa34.66■■■■□ 3.14
TSPAN3-202ENST00000346495 POLA1P09884 1462 aaPredicted RBP34.65■■■■□ 3.14
TSPAN3-202ENST00000346495 KIF21BO75037 1637 aa34.64■■■■□ 3.14
TSPAN3-202ENST00000346495 MRC2Q9UBG0 1479 aa34.6■■■■□ 3.13
TSPAN3-202ENST00000346495 CUX2O14529 1486 aa34.59■■■■□ 3.13
TSPAN3-202ENST00000346495 GOLGA3Q08378 1498 aa34.59■■■■□ 3.13
TSPAN3-202ENST00000346495 ABCA10Q8WWZ4 1543 aa34.53■■■■□ 3.12
TSPAN3-202ENST00000346495 RAD54L2Q9Y4B4 1467 aa34.52■■■■□ 3.12
TSPAN3-202ENST00000346495 ERCC6Q03468 1493 aa34.49■■■■□ 3.11
TSPAN3-202ENST00000346495 TNIKQ9UKE5 1360 aa34.46■■■■□ 3.11
TSPAN3-202ENST00000346495 WDR97A6NE52 1622 aa34.45■■■■□ 3.11
TSPAN3-202ENST00000346495 PRXQ9BXM0 1461 aa34.43■■■■□ 3.1
TSPAN3-202ENST00000346495 WDR62O43379 1518 aa34.43■■■■□ 3.1
TSPAN3-202ENST00000346495 ERICH3Q5RHP9 1530 aa34.41■■■■□ 3.1
TSPAN3-202ENST00000346495 UBTFP17480 764 aaKnown RBP34.39■■■■□ 3.1
TSPAN3-202ENST00000346495 RAPGEF2Q9Y4G8 1499 aa34.38■■■■□ 3.09
TSPAN3-202ENST00000346495 IGF1RP08069 1367 aa34.35■■■■□ 3.09
TSPAN3-202ENST00000346495 TARBP1Q13395 1621 aaKnown RBP34.33■■■■□ 3.09
TSPAN3-202ENST00000346495 THOC2Q8NI27 1593 aaKnown RBP34.32■■■■□ 3.09
TSPAN3-202ENST00000346495 ABCA5Q8WWZ7 1642 aa34.27■■■■□ 3.08
TSPAN3-202ENST00000346495 CEP162Q5TB80 1403 aa34.25■■■■□ 3.07
TSPAN3-202ENST00000346495 CARMIL1Q5VZK9 1371 aa34.2■■■■□ 3.06
TSPAN3-202ENST00000346495 IFT140Q96RY7 1462 aa34.19■■■■□ 3.06
TSPAN3-202ENST00000346495 GAPVD1Q14C86 1478 aa34.18■■■■□ 3.06
TSPAN3-202ENST00000346495 CUL7Q14999 1698 aa34.17■■■■□ 3.06
TSPAN3-202ENST00000346495 TDRD9Q8NDG6 1382 aaKnown RBP34.17■■■■□ 3.06
TSPAN3-202ENST00000346495 PBRM1Q86U86 1689 aa34.03■■■■□ 3.04
TSPAN3-202ENST00000346495 CLIP1P30622 1438 aa34.01■■■■□ 3.03
TSPAN3-202ENST00000346495 AQRO60306 1485 aaKnown RBP eCLIP33.97■■■■□ 3.03
TSPAN3-202ENST00000346495 ZNF608Q9ULD9 1512 aaPredicted RBP33.94■■■■□ 3.02
TSPAN3-202ENST00000346495 GRIN2BQ13224 1484 aa33.92■■■■□ 3.02
TSPAN3-202ENST00000346495 EIF4G3O43432 1585 aaKnown RBP33.88■■■■□ 3.01
TSPAN3-202ENST00000346495 ADAMTS12P58397 1594 aa33.82■■■■□ 3
TSPAN3-202ENST00000346495 FHAD1B1AJZ9 1412 aa33.82■■■■□ 3
TSPAN3-202ENST00000346495 CTTNBP2Q8WZ74 1663 aa33.8■■■■□ 3
TSPAN3-202ENST00000346495 RANGAP1P46060 587 aaPredicted RBP33.78■■■■□ 3
TSPAN3-202ENST00000346495 VPS8Q8N3P4 1428 aa33.71■■■□□ 2.99
TSPAN3-202ENST00000346495 SNAPC4Q5SXM2 1469 aa33.69■■■□□ 2.98
TSPAN3-202ENST00000346495 ARAP1Q96P48 1450 aa33.67■■■□□ 2.98
TSPAN3-202ENST00000346495 ARHGAP35Q9NRY4 1499 aa33.67■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms