RNA–Protein interactions for RNA: ENST00000309469.8

ATG4D-201, Transcript of autophagy related 4D cysteine peptidase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ATG4D, Length 1,949 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-201ENST00000309469 NISCHQ9Y2I1 1504 aa47.22■■■■■ 5.15
ATG4D-201ENST00000309469 CCDC180Q9P1Z9 1646 aa40.88■■■■■ 4.14
ATG4D-201ENST00000309469 ZCCHC6Q5VYS8 1495 aaKnown RBP39.73■■■■□ 3.95
ATG4D-201ENST00000309469 DCAF8L2P0C7V8 631 aa39.03■■■■□ 3.84
ATG4D-201ENST00000309469 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
ATG4D-201ENST00000309469 SHROOM4Q9ULL8 1493 aa38.91■■■■□ 3.82
ATG4D-201ENST00000309469 ABCC9O60706 1549 aa38.48■■■■□ 3.75
ATG4D-201ENST00000309469 MYO15BQ96JP2 1530 aa38.37■■■■□ 3.73
ATG4D-201ENST00000309469 NACADO15069 1562 aa38.05■■■■□ 3.68
ATG4D-201ENST00000309469 SCRIBQ14160 1630 aa37.76■■■■□ 3.64
ATG4D-201ENST00000309469 SUPT5HO00267 1087 aaKnown RBP37.65■■■■□ 3.62
ATG4D-201ENST00000309469 RB1CC1Q8TDY2 1594 aa37.63■■■■□ 3.62
ATG4D-201ENST00000309469 UNC13AQ9UPW8 1703 aa36.84■■■■□ 3.49
ATG4D-201ENST00000309469 RSF1Q96T23 1441 aaPredicted RBP36.83■■■■□ 3.49
ATG4D-201ENST00000309469 CECR2Q9BXF3 1484 aa36.72■■■■□ 3.47
ATG4D-201ENST00000309469 MROH2BQ7Z745 1585 aa36.52■■■■□ 3.44
ATG4D-201ENST00000309469 BICRAQ9NZM4 1560 aa36.52■■■■□ 3.44
ATG4D-201ENST00000309469 PABPN1Q86U42 306 aaKnown RBP eCLIP36.44■■■■□ 3.42
ATG4D-201ENST00000309469 BAZ1AQ9NRL2 1556 aaPredicted RBP36.41■■■■□ 3.42
ATG4D-201ENST00000309469 WIZO95785 1651 aa36.22■■■■□ 3.39
ATG4D-201ENST00000309469 CHIC1Q5VXU3 224 aa36.22■■■■□ 3.39
ATG4D-201ENST00000309469 SMARCA4P51532 1647 aa36.19■■■■□ 3.38
ATG4D-201ENST00000309469 TOP2AP11388 1531 aaKnown RBP35.83■■■■□ 3.33
ATG4D-201ENST00000309469 PEG3Q9GZU2 1588 aa35.71■■■■□ 3.31
ATG4D-201ENST00000309469 ATAD2BQ9ULI0 1458 aa35.54■■■■□ 3.28
ATG4D-201ENST00000309469 CCDC88BA6NC98 1476 aa35.54■■■■□ 3.28
ATG4D-201ENST00000309469 SMARCA2P51531 1590 aa35.53■■■■□ 3.28
ATG4D-201ENST00000309469 EIF4G1Q04637 1599 aaKnown RBP35.39■■■■□ 3.26
ATG4D-201ENST00000309469 BAZ1BQ9UIG0 1483 aaKnown RBP35.35■■■■□ 3.25
ATG4D-201ENST00000309469 TRIM41Q8WV44 630 aa35.34■■■■□ 3.25
ATG4D-201ENST00000309469 NCAPD3P42695 1498 aa35.16■■■■□ 3.22
ATG4D-201ENST00000309469 HMGXB3Q12766 1538 aa35.09■■■■□ 3.21
ATG4D-201ENST00000309469 ABCC8Q09428 1581 aa34.91■■■■□ 3.18
ATG4D-201ENST00000309469 LOC105371045A0A1W2PR82 267 aa34.9■■■■□ 3.18
ATG4D-201ENST00000309469 CC2D2AQ9P2K1 1620 aa34.77■■■■□ 3.16
ATG4D-201ENST00000309469 FAM9AQ8IZU1 332 aaPredicted RBP34.75■■■■□ 3.15
ATG4D-201ENST00000309469 WRNQ14191 1432 aaPredicted RBP eCLIP34.64■■■■□ 3.14
ATG4D-201ENST00000309469 CFTRP13569 1480 aa34.49■■■■□ 3.11
ATG4D-201ENST00000309469 SYNJ1O43426 1573 aa34.45■■■■□ 3.11
ATG4D-201ENST00000309469 SOGA1O94964 1423 aa34.37■■■■□ 3.09
ATG4D-201ENST00000309469 CADPSQ9ULU8 1353 aa34.32■■■■□ 3.08
ATG4D-201ENST00000309469 EEA1Q15075 1411 aa34.31■■■■□ 3.08
ATG4D-201ENST00000309469 EHMT2Q96KQ7 1210 aa34.28■■■■□ 3.08
ATG4D-201ENST00000309469 TOP2BQ02880 1626 aa34.26■■■■□ 3.07
ATG4D-201ENST00000309469 RUSC2Q8N2Y8 1516 aa34.22■■■■□ 3.07
ATG4D-201ENST00000309469 PRDM2Q13029 1718 aa34.19■■■■□ 3.06
ATG4D-201ENST00000309469 BIVM-ERCC5R4GMW8 1640 aa34.19■■■■□ 3.06
ATG4D-201ENST00000309469 CSRNP3Q8WYN3 585 aa34.18■■■■□ 3.06
ATG4D-201ENST00000309469 CUX1P39880 1505 aa34.11■■■■□ 3.05
ATG4D-201ENST00000309469 FANCD2Q9BXW9 1451 aa33.93■■■■□ 3.02
ATG4D-201ENST00000309469 DNAJC5BQ9UF47 199 aa33.92■■■■□ 3.02
ATG4D-201ENST00000309469 NESP48681 1621 aa33.9■■■■□ 3.02
ATG4D-201ENST00000309469 GOLGA3Q08378 1498 aa33.87■■■■□ 3.01
ATG4D-201ENST00000309469 TNIKQ9UKE5 1360 aa33.87■■■■□ 3.01
ATG4D-201ENST00000309469 LAMC3Q9Y6N6 1575 aa33.86■■■■□ 3.01
ATG4D-201ENST00000309469 CEP164Q9UPV0 1460 aa33.84■■■■□ 3.01
ATG4D-201ENST00000309469 KIF21BO75037 1637 aa33.82■■■■□ 3
ATG4D-201ENST00000309469 UBTFP17480 764 aaKnown RBP33.79■■■■□ 3
ATG4D-201ENST00000309469 KIF27Q86VH2 1401 aa33.73■■■□□ 2.99
ATG4D-201ENST00000309469 CEP162Q5TB80 1403 aa33.71■■■□□ 2.99
ATG4D-201ENST00000309469 PCGF6Q9BYE7 350 aa33.69■■■□□ 2.98
ATG4D-201ENST00000309469 FGD5Q6ZNL6 1462 aa33.68■■■□□ 2.98
ATG4D-201ENST00000309469 DNMBPQ6XZF7 1577 aa33.65■■■□□ 2.98
ATG4D-201ENST00000309469 PDS5BQ9NTI5 1447 aa33.64■■■□□ 2.98
ATG4D-201ENST00000309469 RAPGEF2Q9Y4G8 1499 aa33.64■■■□□ 2.98
ATG4D-201ENST00000309469 TOPBP1Q92547 1522 aa33.59■■■□□ 2.97
ATG4D-201ENST00000309469 PRXQ9BXM0 1461 aa33.59■■■□□ 2.97
ATG4D-201ENST00000309469 TRIM26Q12899 539 aaPredicted RBP33.56■■■□□ 2.96
ATG4D-201ENST00000309469 CUX2O14529 1486 aa33.56■■■□□ 2.96
ATG4D-201ENST00000309469 ERICH3Q5RHP9 1530 aa33.52■■■□□ 2.96
ATG4D-201ENST00000309469 URB2Q14146 1524 aaKnown RBP33.48■■■□□ 2.95
ATG4D-201ENST00000309469 POLA1P09884 1462 aaPredicted RBP33.46■■■□□ 2.95
ATG4D-201ENST00000309469 IGF1RP08069 1367 aa33.42■■■□□ 2.94
ATG4D-201ENST00000309469 KIF21AQ7Z4S6 1674 aa33.41■■■□□ 2.94
ATG4D-201ENST00000309469 RAD54L2Q9Y4B4 1467 aa33.4■■■□□ 2.94
ATG4D-201ENST00000309469 CLIP1P30622 1438 aa33.38■■■□□ 2.93
ATG4D-201ENST00000309469 ABCA10Q8WWZ4 1543 aa33.38■■■□□ 2.93
ATG4D-201ENST00000309469 CARMIL1Q5VZK9 1371 aa33.26■■■□□ 2.91
ATG4D-201ENST00000309469 PPARGC1BQ86YN6 1023 aaKnown RBP33.24■■■□□ 2.91
ATG4D-201ENST00000309469 RANGAP1P46060 587 aaPredicted RBP33.17■■■□□ 2.9
ATG4D-201ENST00000309469 MRC2Q9UBG0 1479 aa33.17■■■□□ 2.9
ATG4D-201ENST00000309469 WDR97A6NE52 1622 aa33.16■■■□□ 2.9
ATG4D-201ENST00000309469 VPS8Q8N3P4 1428 aa33.12■■■□□ 2.89
ATG4D-201ENST00000309469 TDRD9Q8NDG6 1382 aaKnown RBP33.06■■■□□ 2.88
ATG4D-201ENST00000309469 ABCA5Q8WWZ7 1642 aa33.04■■■□□ 2.88
ATG4D-201ENST00000309469 TARBP1Q13395 1621 aaKnown RBP33.03■■■□□ 2.88
ATG4D-201ENST00000309469 CUL7Q14999 1698 aa33.01■■■□□ 2.88
ATG4D-201ENST00000309469 GAPVD1Q14C86 1478 aa33.01■■■□□ 2.88
ATG4D-201ENST00000309469 HRCP23327 699 aa33.01■■■□□ 2.88
ATG4D-201ENST00000309469 ARAP1Q96P48 1450 aa32.98■■■□□ 2.87
ATG4D-201ENST00000309469 WDR62O43379 1518 aa32.95■■■□□ 2.87
ATG4D-201ENST00000309469 ERCC6Q03468 1493 aa32.93■■■□□ 2.86
ATG4D-201ENST00000309469 ARHGAP35Q9NRY4 1499 aa32.91■■■□□ 2.86
ATG4D-201ENST00000309469 TTBK1Q5TCY1 1321 aaPredicted RBP32.89■■■□□ 2.86
ATG4D-201ENST00000309469 APLP2Q06481 763 aa32.85■■■□□ 2.85
ATG4D-201ENST00000309469 IFT140Q96RY7 1462 aa32.83■■■□□ 2.85
ATG4D-201ENST00000309469 AQRO60306 1485 aaKnown RBP eCLIP32.78■■■□□ 2.843e-6■■■■□ 19.5
ATG4D-201ENST00000309469 THOC2Q8NI27 1593 aaKnown RBP32.75■■■□□ 2.83
ATG4D-201ENST00000309469 PBRM1Q86U86 1689 aa32.71■■■□□ 2.83
ATG4D-201ENST00000309469 CTTNBP2Q8WZ74 1663 aa32.68■■■□□ 2.82
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms