RNA–Protein interactions for RNA: ENST00000543988.1

OTUB1-212, Transcript of OTU deubiquitinase, ubiquitin aldehyde binding 1, humanhuman

TSL 1 (best) BASIC

Gene OTUB1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
OTUB1-212ENST00000543988 NISCHQ9Y2I1 1504 aa53.04■■■■■ 6.08
OTUB1-212ENST00000543988 CCDC180Q9P1Z9 1646 aa47.1■■■■■ 5.13
OTUB1-212ENST00000543988 ABCC9O60706 1549 aa46.18■■■■■ 4.98
OTUB1-212ENST00000543988 RB1CC1Q8TDY2 1594 aa44.35■■■■■ 4.69
OTUB1-212ENST00000543988 NACADO15069 1562 aa44.31■■■■■ 4.68
OTUB1-212ENST00000543988 DCAF8L2P0C7V8 631 aa44.27■■■■■ 4.68
OTUB1-212ENST00000543988 ZCCHC6Q5VYS8 1495 aaKnown RBP44.21■■■■■ 4.67
OTUB1-212ENST00000543988 MYO15BQ96JP2 1530 aa44.04■■■■■ 4.64
OTUB1-212ENST00000543988 DCAF1Q9Y4B6 1507 aa43.87■■■■■ 4.61
OTUB1-212ENST00000543988 UNC13AQ9UPW8 1703 aa43.28■■■■■ 4.52
OTUB1-212ENST00000543988 PABPN1Q86U42 306 aaKnown RBP eCLIP43.14■■■■■ 4.53e-7■■■■□ 26.7
OTUB1-212ENST00000543988 BICRAQ9NZM4 1560 aa43.05■■■■■ 4.48
OTUB1-212ENST00000543988 SCRIBQ14160 1630 aa43.04■■■■■ 4.48
OTUB1-212ENST00000543988 SHROOM4Q9ULL8 1493 aa42.58■■■■■ 4.41
OTUB1-212ENST00000543988 DNAJC5BQ9UF47 199 aa42.38■■■■■ 4.37
OTUB1-212ENST00000543988 EIF4G1Q04637 1599 aaKnown RBP41.91■■■■■ 4.3
OTUB1-212ENST00000543988 CC2D2AQ9P2K1 1620 aa41.73■■■■■ 4.27
OTUB1-212ENST00000543988 CECR2Q9BXF3 1484 aa41.47■■■■■ 4.23
OTUB1-212ENST00000543988 SMARCA4P51532 1647 aa41.15■■■■■ 4.18
OTUB1-212ENST00000543988 BAZ1AQ9NRL2 1556 aaPredicted RBP41.09■■■■■ 4.17
OTUB1-212ENST00000543988 ATAD2BQ9ULI0 1458 aa40.95■■■■■ 4.15
OTUB1-212ENST00000543988 NCAPD3P42695 1498 aa40.9■■■■■ 4.14
OTUB1-212ENST00000543988 MROH2BQ7Z745 1585 aa40.9■■■■■ 4.14
OTUB1-212ENST00000543988 SMARCA2P51531 1590 aa40.86■■■■■ 4.13
OTUB1-212ENST00000543988 PEG3Q9GZU2 1588 aa40.74■■■■■ 4.11
OTUB1-212ENST00000543988 HMGXB3Q12766 1538 aa40.71■■■■■ 4.11
OTUB1-212ENST00000543988 BAZ1BQ9UIG0 1483 aaKnown RBP40.6■■■■■ 4.09
OTUB1-212ENST00000543988 RSF1Q96T23 1441 aaPredicted RBP40.43■■■■■ 4.06
OTUB1-212ENST00000543988 WIZO95785 1651 aa40.41■■■■■ 4.06
OTUB1-212ENST00000543988 TOP2AP11388 1531 aaKnown RBP40.02■■■■■ 4
OTUB1-212ENST00000543988 NESP48681 1621 aa39.96■■■■□ 3.99
OTUB1-212ENST00000543988 LAMC3Q9Y6N6 1575 aa39.8■■■■□ 3.96
OTUB1-212ENST00000543988 ERCC6Q03468 1493 aa39.78■■■■□ 3.96
OTUB1-212ENST00000543988 CADPSQ9ULU8 1353 aa39.72■■■■□ 3.95
OTUB1-212ENST00000543988 PDS5BQ9NTI5 1447 aa39.54■■■■□ 3.92
OTUB1-212ENST00000543988 CCDC88BA6NC98 1476 aa39.54■■■■□ 3.92
OTUB1-212ENST00000543988 CFTRP13569 1480 aa39.49■■■■□ 3.91
OTUB1-212ENST00000543988 KIF21AQ7Z4S6 1674 aa39.41■■■■□ 3.9
OTUB1-212ENST00000543988 SUPT5HO00267 1087 aaKnown RBP39.38■■■■□ 3.89
OTUB1-212ENST00000543988 CUX2O14529 1486 aa39.34■■■■□ 3.89
OTUB1-212ENST00000543988 THOC2Q8NI27 1593 aaKnown RBP39.33■■■■□ 3.89
OTUB1-212ENST00000543988 FANCD2Q9BXW9 1451 aa39.28■■■■□ 3.88
OTUB1-212ENST00000543988 CEP164Q9UPV0 1460 aa39.23■■■■□ 3.87
OTUB1-212ENST00000543988 MRC2Q9UBG0 1479 aa39.18■■■■□ 3.86
OTUB1-212ENST00000543988 PRDM2Q13029 1718 aa39.07■■■■□ 3.85
OTUB1-212ENST00000543988 WDR62O43379 1518 aa39.04■■■■□ 3.84
OTUB1-212ENST00000543988 URB2Q14146 1524 aaKnown RBP38.9■■■■□ 3.82
OTUB1-212ENST00000543988 TOPBP1Q92547 1522 aa38.65■■■■□ 3.78
OTUB1-212ENST00000543988 DNMBPQ6XZF7 1577 aa38.59■■■■□ 3.77
OTUB1-212ENST00000543988 ABCC8Q09428 1581 aa38.57■■■■□ 3.77
OTUB1-212ENST00000543988 IFT140Q96RY7 1462 aa38.4■■■■□ 3.74
OTUB1-212ENST00000543988 CUX1P39880 1505 aa38.38■■■■□ 3.73
OTUB1-212ENST00000543988 POLA1P09884 1462 aaPredicted RBP38.34■■■■□ 3.73
OTUB1-212ENST00000543988 ZNF608Q9ULD9 1512 aaPredicted RBP38.26■■■■□ 3.72
OTUB1-212ENST00000543988 FGD5Q6ZNL6 1462 aa38.24■■■■□ 3.71
OTUB1-212ENST00000543988 TARBP1Q13395 1621 aaKnown RBP38.21■■■■□ 3.71
OTUB1-212ENST00000543988 RAD54L2Q9Y4B4 1467 aa38.17■■■■□ 3.7
OTUB1-212ENST00000543988 SOGA1O94964 1423 aa38.13■■■■□ 3.7
OTUB1-212ENST00000543988 DNAJC5Q9H3Z4 198 aa38.12■■■■□ 3.69
OTUB1-212ENST00000543988 WRNQ14191 1432 aaPredicted RBP eCLIP38.11■■■■□ 3.69
OTUB1-212ENST00000543988 EIF4G3O43432 1585 aaKnown RBP38.08■■■■□ 3.69
OTUB1-212ENST00000543988 SYNJ1O43426 1573 aa38.03■■■■□ 3.68
OTUB1-212ENST00000543988 AQRO60306 1485 aaKnown RBP eCLIP38.03■■■■□ 3.683e-10■■■■■ 44.3
OTUB1-212ENST00000543988 TOP2BQ02880 1626 aa38■■■■□ 3.67
OTUB1-212ENST00000543988 BIVM-ERCC5R4GMW8 1640 aa37.98■■■■□ 3.67
OTUB1-212ENST00000543988 TDRD9Q8NDG6 1382 aaKnown RBP37.96■■■■□ 3.67
OTUB1-212ENST00000543988 WDR97A6NE52 1622 aa37.88■■■■□ 3.65
OTUB1-212ENST00000543988 ABCA10Q8WWZ4 1543 aa37.86■■■■□ 3.65
OTUB1-212ENST00000543988 GRIN2BQ13224 1484 aa37.71■■■■□ 3.63
OTUB1-212ENST00000543988 GAPVD1Q14C86 1478 aa37.71■■■■□ 3.63
OTUB1-212ENST00000543988 ABCA5Q8WWZ7 1642 aa37.7■■■■□ 3.63
OTUB1-212ENST00000543988 SNAPC4Q5SXM2 1469 aa37.69■■■■□ 3.62
OTUB1-212ENST00000543988 OSCARQ8IYS5 282 aa37.67■■■■□ 3.62
OTUB1-212ENST00000543988 MAGI1Q96QZ7 1491 aaPredicted RBP37.61■■■■□ 3.61
OTUB1-212ENST00000543988 PBRM1Q86U86 1689 aa37.57■■■■□ 3.61
OTUB1-212ENST00000543988 CHD1O14646 1710 aa37.54■■■■□ 3.6
OTUB1-212ENST00000543988 FBLN2P98095 1184 aa37.54■■■■□ 3.6
OTUB1-212ENST00000543988 SYNJ2O15056 1496 aa37.47■■■■□ 3.59
OTUB1-212ENST00000543988 CHMP7Q8WUX9 453 aaPredicted RBP37.42■■■■□ 3.58
OTUB1-212ENST00000543988 ERICH3Q5RHP9 1530 aa37.38■■■■□ 3.57
OTUB1-212ENST00000543988 ADAMTS12P58397 1594 aa37.37■■■■□ 3.57
OTUB1-212ENST00000543988 KIF27Q86VH2 1401 aa37.3■■■■□ 3.56
OTUB1-212ENST00000543988 FHAD1B1AJZ9 1412 aa37.27■■■■□ 3.56
OTUB1-212ENST00000543988 GRIN2AQ12879 1464 aa37.24■■■■□ 3.55
OTUB1-212ENST00000543988 CLASP1Q7Z460 1538 aa37.2■■■■□ 3.55
OTUB1-212ENST00000543988 TRIM41Q8WV44 630 aa37.16■■■■□ 3.54
OTUB1-212ENST00000543988 IGF1RP08069 1367 aa37.16■■■■□ 3.54
OTUB1-212ENST00000543988 ARHGEF11O15085 1522 aa37.13■■■■□ 3.53
OTUB1-212ENST00000543988 RIMBP3CA6NJZ7 1639 aa37.1■■■■□ 3.53
OTUB1-212ENST00000543988 RIMBP3BA6NNM3 1639 aa37.1■■■■□ 3.53
OTUB1-212ENST00000543988 RIMBP3Q9UFD9 1639 aa37.1■■■■□ 3.53
OTUB1-212ENST00000543988 NUP160Q12769 1436 aa37.09■■■■□ 3.53
OTUB1-212ENST00000543988 CEP170Q5SW79 1584 aa37.05■■■■□ 3.52
OTUB1-212ENST00000543988 CUL7Q14999 1698 aa37.02■■■■□ 3.52
OTUB1-212ENST00000543988 RUSC2Q8N2Y8 1516 aa36.99■■■■□ 3.51
OTUB1-212ENST00000543988 CARMIL1Q5VZK9 1371 aa36.92■■■■□ 3.5
OTUB1-212ENST00000543988 ARAP1Q96P48 1450 aa36.86■■■■□ 3.49
OTUB1-212ENST00000543988 SHROOM2Q13796 1616 aa36.76■■■■□ 3.48
OTUB1-212ENST00000543988 CHIC1Q5VXU3 224 aa36.75■■■■□ 3.47
OTUB1-212ENST00000543988 CYB5RLQ6IPT4 315 aa36.75■■■■□ 3.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms