RNA–Protein interactions for RNA: ENST00000474617.1

CCM2-206, Transcript of CCM2 scaffold protein, humanhuman

TSL 5 BASIC

Gene CCM2, Length 1,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-206ENST00000474617 NISCHQ9Y2I1 1504 aa48.01■■■■■ 5.28
CCM2-206ENST00000474617 CCDC180Q9P1Z9 1646 aa41.74■■■■■ 4.27
CCM2-206ENST00000474617 ZCCHC6Q5VYS8 1495 aaKnown RBP40.46■■■■■ 4.07
CCM2-206ENST00000474617 DCAF1Q9Y4B6 1507 aa39.91■■■■□ 3.98
CCM2-206ENST00000474617 MYO15BQ96JP2 1530 aa39.28■■■■□ 3.88
CCM2-206ENST00000474617 SHROOM4Q9ULL8 1493 aa39.18■■■■□ 3.86
CCM2-206ENST00000474617 DCAF8L2P0C7V8 631 aa39.16■■■■□ 3.86
CCM2-206ENST00000474617 NACADO15069 1562 aa38.75■■■■□ 3.79
CCM2-206ENST00000474617 ABCC9O60706 1549 aa38.65■■■■□ 3.78
CCM2-206ENST00000474617 RB1CC1Q8TDY2 1594 aa38.23■■■■□ 3.71
CCM2-206ENST00000474617 SCRIBQ14160 1630 aa38.19■■■■□ 3.7
CCM2-206ENST00000474617 SUPT5HO00267 1087 aaKnown RBP38.05■■■■□ 3.68
CCM2-206ENST00000474617 RSF1Q96T23 1441 aaPredicted RBP37.4■■■■□ 3.58
CCM2-206ENST00000474617 UNC13AQ9UPW8 1703 aa37.28■■■■□ 3.56
CCM2-206ENST00000474617 BAZ1AQ9NRL2 1556 aaPredicted RBP37.1■■■■□ 3.53
CCM2-206ENST00000474617 CECR2Q9BXF3 1484 aa37.07■■■■□ 3.52
CCM2-206ENST00000474617 MROH2BQ7Z745 1585 aa36.98■■■■□ 3.51
CCM2-206ENST00000474617 BICRAQ9NZM4 1560 aa36.91■■■■□ 3.5
CCM2-206ENST00000474617 CHIC1Q5VXU3 224 aa36.84■■■■□ 3.49
CCM2-206ENST00000474617 SMARCA4P51532 1647 aa36.77■■■■□ 3.48
CCM2-206ENST00000474617 WIZO95785 1651 aa36.68■■■■□ 3.46
CCM2-206ENST00000474617 TOP2AP11388 1531 aaKnown RBP36.5■■■■□ 3.43
CCM2-206ENST00000474617 PABPN1Q86U42 306 aaKnown RBP eCLIP36.47■■■■□ 3.43
CCM2-206ENST00000474617 PEG3Q9GZU2 1588 aa36.43■■■■□ 3.42
CCM2-206ENST00000474617 SMARCA2P51531 1590 aa36.15■■■■□ 3.38
CCM2-206ENST00000474617 EIF4G1Q04637 1599 aaKnown RBP36.03■■■■□ 3.36
CCM2-206ENST00000474617 CCDC88BA6NC98 1476 aa36.03■■■■□ 3.36
CCM2-206ENST00000474617 ATAD2BQ9ULI0 1458 aa36.02■■■■□ 3.36
CCM2-206ENST00000474617 TRIM41Q8WV44 630 aa35.92■■■■□ 3.34
CCM2-206ENST00000474617 BAZ1BQ9UIG0 1483 aaKnown RBP35.87■■■■□ 3.33
CCM2-206ENST00000474617 HMGXB3Q12766 1538 aa35.75■■■■□ 3.31
CCM2-206ENST00000474617 NCAPD3P42695 1498 aa35.71■■■■□ 3.31
CCM2-206ENST00000474617 ABCC8Q09428 1581 aa35.32■■■■□ 3.25
CCM2-206ENST00000474617 LOC105371045A0A1W2PR82 267 aa35.27■■■■□ 3.24
CCM2-206ENST00000474617 WRNQ14191 1432 aaPredicted RBP eCLIP35.23■■■■□ 3.23
CCM2-206ENST00000474617 EEA1Q15075 1411 aa35.23■■■■□ 3.23
CCM2-206ENST00000474617 CC2D2AQ9P2K1 1620 aa35.08■■■■□ 3.21
CCM2-206ENST00000474617 CFTRP13569 1480 aa35.04■■■■□ 3.2
CCM2-206ENST00000474617 FAM9AQ8IZU1 332 aaPredicted RBP35.02■■■■□ 3.2
CCM2-206ENST00000474617 SYNJ1O43426 1573 aa34.96■■■■□ 3.19
CCM2-206ENST00000474617 PRDM2Q13029 1718 aa34.93■■■■□ 3.18
CCM2-206ENST00000474617 TOP2BQ02880 1626 aa34.91■■■■□ 3.18
CCM2-206ENST00000474617 BIVM-ERCC5R4GMW8 1640 aa34.87■■■■□ 3.17
CCM2-206ENST00000474617 SOGA1O94964 1423 aa34.81■■■■□ 3.16
CCM2-206ENST00000474617 CADPSQ9ULU8 1353 aa34.79■■■■□ 3.16
CCM2-206ENST00000474617 CSRNP3Q8WYN3 585 aa34.75■■■■□ 3.15
CCM2-206ENST00000474617 GOLGA3Q08378 1498 aa34.61■■■■□ 3.13
CCM2-206ENST00000474617 KIF21BO75037 1637 aa34.61■■■■□ 3.13
CCM2-206ENST00000474617 TNIKQ9UKE5 1360 aa34.61■■■■□ 3.13
CCM2-206ENST00000474617 CEP164Q9UPV0 1460 aa34.59■■■■□ 3.13
CCM2-206ENST00000474617 CUX1P39880 1505 aa34.58■■■■□ 3.13
CCM2-206ENST00000474617 RUSC2Q8N2Y8 1516 aa34.56■■■■□ 3.12
CCM2-206ENST00000474617 LAMC3Q9Y6N6 1575 aa34.43■■■■□ 3.1
CCM2-206ENST00000474617 TRIM26Q12899 539 aaPredicted RBP34.4■■■■□ 3.1
CCM2-206ENST00000474617 CEP162Q5TB80 1403 aa34.37■■■■□ 3.09
CCM2-206ENST00000474617 KIF27Q86VH2 1401 aa34.36■■■■□ 3.09
CCM2-206ENST00000474617 FANCD2Q9BXW9 1451 aa34.36■■■■□ 3.09
CCM2-206ENST00000474617 EHMT2Q96KQ7 1210 aa34.33■■■■□ 3.09
CCM2-206ENST00000474617 ERICH3Q5RHP9 1530 aa34.32■■■■□ 3.08
CCM2-206ENST00000474617 PCGF6Q9BYE7 350 aa34.31■■■■□ 3.08
CCM2-206ENST00000474617 UBTFP17480 764 aaKnown RBP34.27■■■■□ 3.08
CCM2-206ENST00000474617 PRXQ9BXM0 1461 aa34.22■■■■□ 3.07
CCM2-206ENST00000474617 DNMBPQ6XZF7 1577 aa34.22■■■■□ 3.07
CCM2-206ENST00000474617 PDS5BQ9NTI5 1447 aa34.14■■■■□ 3.06
CCM2-206ENST00000474617 FGD5Q6ZNL6 1462 aa34.13■■■■□ 3.05
CCM2-206ENST00000474617 RAPGEF2Q9Y4G8 1499 aa34.13■■■■□ 3.05
CCM2-206ENST00000474617 NESP48681 1621 aa34.07■■■■□ 3.04
CCM2-206ENST00000474617 TOPBP1Q92547 1522 aa34.04■■■■□ 3.04
CCM2-206ENST00000474617 CUX2O14529 1486 aa34.02■■■■□ 3.04
CCM2-206ENST00000474617 CLIP1P30622 1438 aa34.01■■■■□ 3.04
CCM2-206ENST00000474617 ABCA10Q8WWZ4 1543 aa33.96■■■■□ 3.03
CCM2-206ENST00000474617 HRCP23327 699 aa33.93■■■■□ 3.02
CCM2-206ENST00000474617 POLA1P09884 1462 aaPredicted RBP33.91■■■■□ 3.02
CCM2-206ENST00000474617 IGF1RP08069 1367 aa33.89■■■■□ 3.02
CCM2-206ENST00000474617 VPS8Q8N3P4 1428 aa33.84■■■■□ 3.01
CCM2-206ENST00000474617 URB2Q14146 1524 aaKnown RBP33.84■■■■□ 3.01
CCM2-206ENST00000474617 CARMIL1Q5VZK9 1371 aa33.75■■■□□ 2.99
CCM2-206ENST00000474617 KIF21AQ7Z4S6 1674 aa33.75■■■□□ 2.99
CCM2-206ENST00000474617 WDR97A6NE52 1622 aa33.74■■■□□ 2.99
CCM2-206ENST00000474617 CUL7Q14999 1698 aa33.73■■■□□ 2.99
CCM2-206ENST00000474617 RAD54L2Q9Y4B4 1467 aa33.68■■■□□ 2.98
CCM2-206ENST00000474617 DNAJC5BQ9UF47 199 aa33.68■■■□□ 2.98
CCM2-206ENST00000474617 MRC2Q9UBG0 1479 aa33.62■■■□□ 2.97
CCM2-206ENST00000474617 ABCA5Q8WWZ7 1642 aa33.59■■■□□ 2.97
CCM2-206ENST00000474617 ARAP1Q96P48 1450 aa33.55■■■□□ 2.96
CCM2-206ENST00000474617 APLP2Q06481 763 aa33.54■■■□□ 2.96
CCM2-206ENST00000474617 ZEB1P37275 1124 aaPredicted RBP33.52■■■□□ 2.96
CCM2-206ENST00000474617 TARBP1Q13395 1621 aaKnown RBP33.49■■■□□ 2.95
CCM2-206ENST00000474617 GAPVD1Q14C86 1478 aa33.48■■■□□ 2.95
CCM2-206ENST00000474617 ARHGAP35Q9NRY4 1499 aa33.46■■■□□ 2.95
CCM2-206ENST00000474617 WDR62O43379 1518 aa33.43■■■□□ 2.94
CCM2-206ENST00000474617 PPARGC1BQ86YN6 1023 aaKnown RBP33.42■■■□□ 2.94
CCM2-206ENST00000474617 EFCAB5A4FU69 1503 aa33.37■■■□□ 2.93
CCM2-206ENST00000474617 IFT140Q96RY7 1462 aa33.34■■■□□ 2.93
CCM2-206ENST00000474617 CTTNBP2Q8WZ74 1663 aa33.34■■■□□ 2.93
CCM2-206ENST00000474617 TDRD9Q8NDG6 1382 aaKnown RBP33.31■■■□□ 2.92
CCM2-206ENST00000474617 MAP3K1Q13233 1512 aa33.31■■■□□ 2.92
CCM2-206ENST00000474617 FHAD1B1AJZ9 1412 aa33.29■■■□□ 2.92
CCM2-206ENST00000474617 RANGAP1P46060 587 aaPredicted RBP33.28■■■□□ 2.92
CCM2-206ENST00000474617 PBRM1Q86U86 1689 aa33.23■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms