RNA–Protein interactions for RNA: ENST00000330687.8

CMTM4-201, Transcript of CKLF like MARVEL transmembrane domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene CMTM4, Length 3,414 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM4-201ENST00000330687 NISCHQ9Y2I1 1504 aa37.11■■■■□ 3.53
CMTM4-201ENST00000330687 HRCP23327 699 aa34.72■■■■□ 3.15
CMTM4-201ENST00000330687 SUPT5HO00267 1087 aaKnown RBP34.61■■■■□ 3.13
CMTM4-201ENST00000330687 PPARGC1BQ86YN6 1023 aaKnown RBP34.6■■■■□ 3.13
CMTM4-201ENST00000330687 SHROOM4Q9ULL8 1493 aa34.54■■■■□ 3.12
CMTM4-201ENST00000330687 PCGF6Q9BYE7 350 aa34.52■■■■□ 3.12
CMTM4-201ENST00000330687 PELP1Q8IZL8 1130 aaKnown RBP33.6■■■□□ 2.97
CMTM4-201ENST00000330687 MYO15BQ96JP2 1530 aa33.43■■■□□ 2.94
CMTM4-201ENST00000330687 CHIC1Q5VXU3 224 aa33.4■■■□□ 2.94
CMTM4-201ENST00000330687 LOC105371045A0A1W2PR82 267 aa33.16■■■□□ 2.9
CMTM4-201ENST00000330687 SCAF1Q9H7N4 1312 aaKnown RBP33.15■■■□□ 2.9
CMTM4-201ENST00000330687 DCAF8L2P0C7V8 631 aa32.84■■■□□ 2.85
CMTM4-201ENST00000330687 TRIM26Q12899 539 aaPredicted RBP32.8■■■□□ 2.84
CMTM4-201ENST00000330687 EHMT2Q96KQ7 1210 aa32.61■■■□□ 2.81
CMTM4-201ENST00000330687 ZEB1P37275 1124 aaPredicted RBP32.45■■■□□ 2.79
CMTM4-201ENST00000330687 DCAF1Q9Y4B6 1507 aa32.35■■■□□ 2.77
CMTM4-201ENST00000330687 NEUROD1Q13562 356 aa32.28■■■□□ 2.76
CMTM4-201ENST00000330687 GTF3C3Q9Y5Q9 886 aa32.26■■■□□ 2.76
CMTM4-201ENST00000330687 FAM9AQ8IZU1 332 aaPredicted RBP32.24■■■□□ 2.75
CMTM4-201ENST00000330687 MYT1Q01538 1121 aa32.22■■■□□ 2.75
CMTM4-201ENST00000330687 ACIN1Q9UKV3 1341 aaKnown RBP32.2■■■□□ 2.74
CMTM4-201ENST00000330687 CENPBP07199 599 aaPredicted RBP31.95■■■□□ 2.7
CMTM4-201ENST00000330687 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.92■■■□□ 2.7
CMTM4-201ENST00000330687 YTHDC1Q96MU7 727 aaKnown RBP31.89■■■□□ 2.7
CMTM4-201ENST00000330687 CCDC180Q9P1Z9 1646 aa31.87■■■□□ 2.69
CMTM4-201ENST00000330687 CCER1Q8TC90 406 aaPredicted RBP31.86■■■□□ 2.69
CMTM4-201ENST00000330687 TTBK1Q5TCY1 1321 aaPredicted RBP31.78■■■□□ 2.68
CMTM4-201ENST00000330687 DIEXFQ68CQ4 756 aaKnown RBP31.75■■■□□ 2.67
CMTM4-201ENST00000330687 TRIM41Q8WV44 630 aa31.63■■■□□ 2.65
CMTM4-201ENST00000330687 ZCCHC6Q5VYS8 1495 aaKnown RBP31.46■■■□□ 2.63
CMTM4-201ENST00000330687 MIER1Q8N108 512 aa30.92■■■□□ 2.54
CMTM4-201ENST00000330687 ZNF316A6NFI3 1004 aaPredicted RBP30.89■■■□□ 2.54
CMTM4-201ENST00000330687 BCL11AQ9H165 835 aa30.69■■■□□ 2.5
CMTM4-201ENST00000330687 HNRNPUL2Q1KMD3 747 aaKnown RBP30.56■■■□□ 2.48
CMTM4-201ENST00000330687 BCANQ96GW7 911 aa30.45■■■□□ 2.47
CMTM4-201ENST00000330687 ANP32EQ9BTT0 268 aa30.44■■■□□ 2.46
CMTM4-201ENST00000330687 SUPT16HQ9Y5B9 1047 aaKnown RBP30.39■■■□□ 2.46
CMTM4-201ENST00000330687 CSRNP3Q8WYN3 585 aa30.34■■■□□ 2.45
CMTM4-201ENST00000330687 TSHZ2Q9NRE2 1034 aa30.29■■■□□ 2.44
CMTM4-201ENST00000330687 RSF1Q96T23 1441 aaPredicted RBP30.24■■■□□ 2.43
CMTM4-201ENST00000330687 UBTFP17480 764 aaKnown RBP30.24■■■□□ 2.43
CMTM4-201ENST00000330687 RB1CC1Q8TDY2 1594 aa30.15■■■□□ 2.42
CMTM4-201ENST00000330687 RANGAP1P46060 587 aaPredicted RBP30.15■■■□□ 2.42
CMTM4-201ENST00000330687 FKBP8Q14318 412 aa29.89■■■□□ 2.37
CMTM4-201ENST00000330687 ABCC9O60706 1549 aa29.87■■■□□ 2.37
CMTM4-201ENST00000330687 ITGAEP38570 1179 aa29.85■■■□□ 2.37
CMTM4-201ENST00000330687 CEP162Q5TB80 1403 aa29.83■■■□□ 2.37
CMTM4-201ENST00000330687 KCNH8Q96L42 1107 aa29.81■■■□□ 2.36
CMTM4-201ENST00000330687 APLP2Q06481 763 aa29.8■■■□□ 2.36
CMTM4-201ENST00000330687 SCRIBQ14160 1630 aa29.77■■■□□ 2.36
CMTM4-201ENST00000330687 CLSPNQ9HAW4 1339 aa29.71■■■□□ 2.35
CMTM4-201ENST00000330687 ERICH6Q7L0X2 663 aa29.7■■■□□ 2.35
CMTM4-201ENST00000330687 NEFLP07196 543 aa29.67■■■□□ 2.34
CMTM4-201ENST00000330687 RBM19Q9Y4C8 960 aaKnown RBP29.66■■■□□ 2.34
CMTM4-201ENST00000330687 TRIM52Q96A61 297 aa29.51■■■□□ 2.31
CMTM4-201ENST00000330687 WRNQ14191 1432 aaPredicted RBP eCLIP29.5■■■□□ 2.31
CMTM4-201ENST00000330687 CECR2Q9BXF3 1484 aa29.49■■■□□ 2.31
CMTM4-201ENST00000330687 SOGA1O94964 1423 aa29.48■■■□□ 2.31
CMTM4-201ENST00000330687 CCDC88BA6NC98 1476 aa29.42■■■□□ 2.3
CMTM4-201ENST00000330687 PRKCSHP14314 528 aaPredicted RBP29.41■■■□□ 2.3
CMTM4-201ENST00000330687 DDX10Q13206 875 aaKnown RBP29.39■■■□□ 2.29
CMTM4-201ENST00000330687 TNIKQ9UKE5 1360 aa29.38■■■□□ 2.29
CMTM4-201ENST00000330687 ABCC8Q09428 1581 aa29.37■■■□□ 2.29
CMTM4-201ENST00000330687 IRX6P78412 446 aaPredicted RBP29.36■■■□□ 2.29
CMTM4-201ENST00000330687 HIRIP3Q9BW71 556 aaPredicted RBP29.32■■■□□ 2.28
CMTM4-201ENST00000330687 MSH5O43196 834 aa29.32■■■□□ 2.28
CMTM4-201ENST00000330687 RUSC2Q8N2Y8 1516 aa29.27■■■□□ 2.28
CMTM4-201ENST00000330687 MROH2BQ7Z745 1585 aa29.26■■■□□ 2.28
CMTM4-201ENST00000330687 WIZO95785 1651 aa29.14■■■□□ 2.25
CMTM4-201ENST00000330687 NBR1Q14596 966 aa29.13■■■□□ 2.25
CMTM4-201ENST00000330687 CDK11AQ9UQ88 783 aaPredicted RBP29.1■■■□□ 2.25
CMTM4-201ENST00000330687 DHX57Q6P158 1386 aaKnown RBP29.09■■■□□ 2.25
CMTM4-201ENST00000330687 CLIP1P30622 1438 aa29.06■■■□□ 2.24
CMTM4-201ENST00000330687 DEKP35659 375 aaKnown RBP29.06■■■□□ 2.24
CMTM4-201ENST00000330687 GOLGA3Q08378 1498 aa29■■■□□ 2.23
CMTM4-201ENST00000330687 ANO8Q9HCE9 1232 aaPredicted RBP28.97■■■□□ 2.23
CMTM4-201ENST00000330687 ANP32CO43423 234 aa28.94■■■□□ 2.22
CMTM4-201ENST00000330687 KANK4Q5T7N3 995 aaPredicted RBP28.88■■■□□ 2.21
CMTM4-201ENST00000330687 HNRNPUQ00839 825 aaKnown RBP eCLIP28.87■■■□□ 2.21
CMTM4-201ENST00000330687 SIN3AQ96ST3 1273 aa28.87■■■□□ 2.21
CMTM4-201ENST00000330687 RTN4Q9NQC3 1192 aaKnown RBP28.85■■■□□ 2.21
CMTM4-201ENST00000330687 CCDC136Q96JN2 1154 aa28.81■■■□□ 2.2
CMTM4-201ENST00000330687 VPS8Q8N3P4 1428 aa28.8■■■□□ 2.2
CMTM4-201ENST00000330687 FANCIQ9NVI1 1328 aa28.73■■■□□ 2.19
CMTM4-201ENST00000330687 EEA1Q15075 1411 aa28.72■■■□□ 2.19
CMTM4-201ENST00000330687 B4GALNT3Q6L9W6 998 aa28.7■■■□□ 2.18
CMTM4-201ENST00000330687 CNGB1Q14028 1251 aaPredicted RBP28.67■■■□□ 2.18
CMTM4-201ENST00000330687 SALL2Q9Y467 1007 aaPredicted RBP28.67■■■□□ 2.18
CMTM4-201ENST00000330687 ZBTB4Q9P1Z0 1013 aaPredicted RBP28.63■■■□□ 2.17
CMTM4-201ENST00000330687 FAM50AQ14320 339 aaKnown RBP28.62■■■□□ 2.17
CMTM4-201ENST00000330687 RTL5Q5HYW3 569 aaPredicted RBP28.62■■■□□ 2.17
CMTM4-201ENST00000330687 ATP1B4Q9UN42 357 aaPredicted RBP28.62■■■□□ 2.17
CMTM4-201ENST00000330687 CEP164Q9UPV0 1460 aa28.62■■■□□ 2.17
CMTM4-201ENST00000330687 PAK3O75914 559 aaPredicted RBP28.56■■■□□ 2.16
CMTM4-201ENST00000330687 NOP58Q9Y2X3 529 aaKnown RBP28.55■■■□□ 2.16
CMTM4-201ENST00000330687 PPP1R15AO75807 674 aaPredicted RBP28.54■■■□□ 2.16
CMTM4-201ENST00000330687 BAZ1AQ9NRL2 1556 aaPredicted RBP28.53■■■□□ 2.16
CMTM4-201ENST00000330687 SENP3-EIF4A1A0A087X0R7 540 aa28.53■■■□□ 2.16
CMTM4-201ENST00000330687 MYT1LQ9UL68 1186 aa28.53■■■□□ 2.16
CMTM4-201ENST00000330687 RAPGEF2Q9Y4G8 1499 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 146.5 ms