RNA–Protein interactions for RNA: ENST00000274721.7

GFRA3-201, Transcript of GDNF family receptor alpha 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GFRA3, Length 2,039 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3-201ENST00000274721 NISCHQ9Y2I1 1504 aa47.6■■■■■ 5.21
GFRA3-201ENST00000274721 CCDC180Q9P1Z9 1646 aa41.24■■■■■ 4.19
GFRA3-201ENST00000274721 ZCCHC6Q5VYS8 1495 aaKnown RBP40.05■■■■■ 4
GFRA3-201ENST00000274721 DCAF1Q9Y4B6 1507 aa39.35■■■■□ 3.89
GFRA3-201ENST00000274721 DCAF8L2P0C7V8 631 aa39.19■■■■□ 3.86
GFRA3-201ENST00000274721 SHROOM4Q9ULL8 1493 aa39.09■■■■□ 3.85
GFRA3-201ENST00000274721 MYO15BQ96JP2 1530 aa38.75■■■■□ 3.79
GFRA3-201ENST00000274721 ABCC9O60706 1549 aa38.73■■■■□ 3.79
GFRA3-201ENST00000274721 NACADO15069 1562 aa38.37■■■■□ 3.73
GFRA3-201ENST00000274721 SCRIBQ14160 1630 aa38■■■■□ 3.67
GFRA3-201ENST00000274721 RB1CC1Q8TDY2 1594 aa37.93■■■■□ 3.66
GFRA3-201ENST00000274721 SUPT5HO00267 1087 aaKnown RBP37.82■■■■□ 3.64
GFRA3-201ENST00000274721 UNC13AQ9UPW8 1703 aa37.2■■■■□ 3.55
GFRA3-201ENST00000274721 RSF1Q96T23 1441 aaPredicted RBP37.11■■■■□ 3.53
GFRA3-201ENST00000274721 CECR2Q9BXF3 1484 aa36.99■■■■□ 3.51
GFRA3-201ENST00000274721 BICRAQ9NZM4 1560 aa36.85■■■■□ 3.49
GFRA3-201ENST00000274721 MROH2BQ7Z745 1585 aa36.8■■■■□ 3.48
GFRA3-201ENST00000274721 BAZ1AQ9NRL2 1556 aaPredicted RBP36.69■■■■□ 3.46
GFRA3-201ENST00000274721 PABPN1Q86U42 306 aaKnown RBP eCLIP36.66■■■■□ 3.46
GFRA3-201ENST00000274721 WIZO95785 1651 aa36.49■■■■□ 3.43
GFRA3-201ENST00000274721 SMARCA4P51532 1647 aa36.47■■■■□ 3.43
GFRA3-201ENST00000274721 CHIC1Q5VXU3 224 aa36.45■■■■□ 3.43
GFRA3-201ENST00000274721 TOP2AP11388 1531 aaKnown RBP36.1■■■■□ 3.37
GFRA3-201ENST00000274721 PEG3Q9GZU2 1588 aa36.05■■■■□ 3.36
GFRA3-201ENST00000274721 ATAD2BQ9ULI0 1458 aa35.83■■■■□ 3.33
GFRA3-201ENST00000274721 SMARCA2P51531 1590 aa35.8■■■■□ 3.32
GFRA3-201ENST00000274721 CCDC88BA6NC98 1476 aa35.8■■■■□ 3.32
GFRA3-201ENST00000274721 EIF4G1Q04637 1599 aaKnown RBP35.68■■■■□ 3.3
GFRA3-201ENST00000274721 BAZ1BQ9UIG0 1483 aaKnown RBP35.61■■■■□ 3.29
GFRA3-201ENST00000274721 TRIM41Q8WV44 630 aa35.52■■■■□ 3.28
GFRA3-201ENST00000274721 NCAPD3P42695 1498 aa35.47■■■■□ 3.27
GFRA3-201ENST00000274721 HMGXB3Q12766 1538 aa35.4■■■■□ 3.26
GFRA3-201ENST00000274721 ABCC8Q09428 1581 aa35.13■■■■□ 3.21
GFRA3-201ENST00000274721 LOC105371045A0A1W2PR82 267 aa35.07■■■■□ 3.2
GFRA3-201ENST00000274721 CC2D2AQ9P2K1 1620 aa35.05■■■■□ 3.2
GFRA3-201ENST00000274721 WRNQ14191 1432 aaPredicted RBP eCLIP34.88■■■■□ 3.17
GFRA3-201ENST00000274721 FAM9AQ8IZU1 332 aaPredicted RBP34.88■■■■□ 3.17
GFRA3-201ENST00000274721 CFTRP13569 1480 aa34.79■■■■□ 3.16
GFRA3-201ENST00000274721 SYNJ1O43426 1573 aa34.71■■■■□ 3.15
GFRA3-201ENST00000274721 SOGA1O94964 1423 aa34.6■■■■□ 3.13
GFRA3-201ENST00000274721 CADPSQ9ULU8 1353 aa34.59■■■■□ 3.13
GFRA3-201ENST00000274721 EEA1Q15075 1411 aa34.56■■■■□ 3.12
GFRA3-201ENST00000274721 TOP2BQ02880 1626 aa34.53■■■■□ 3.12
GFRA3-201ENST00000274721 PRDM2Q13029 1718 aa34.51■■■■□ 3.12
GFRA3-201ENST00000274721 BIVM-ERCC5R4GMW8 1640 aa34.46■■■■□ 3.11
GFRA3-201ENST00000274721 RUSC2Q8N2Y8 1516 aa34.45■■■■□ 3.11
GFRA3-201ENST00000274721 CSRNP3Q8WYN3 585 aa34.39■■■■□ 3.1
GFRA3-201ENST00000274721 CUX1P39880 1505 aa34.37■■■■□ 3.09
GFRA3-201ENST00000274721 EHMT2Q96KQ7 1210 aa34.35■■■■□ 3.09
GFRA3-201ENST00000274721 DNAJC5BQ9UF47 199 aa34.2■■■■□ 3.06
GFRA3-201ENST00000274721 FANCD2Q9BXW9 1451 aa34.17■■■■□ 3.06
GFRA3-201ENST00000274721 NESP48681 1621 aa34.16■■■■□ 3.06
GFRA3-201ENST00000274721 LAMC3Q9Y6N6 1575 aa34.14■■■■□ 3.06
GFRA3-201ENST00000274721 TNIKQ9UKE5 1360 aa34.1■■■■□ 3.05
GFRA3-201ENST00000274721 GOLGA3Q08378 1498 aa34.08■■■■□ 3.05
GFRA3-201ENST00000274721 KIF21BO75037 1637 aa34.07■■■■□ 3.04
GFRA3-201ENST00000274721 CEP164Q9UPV0 1460 aa34.06■■■■□ 3.04
GFRA3-201ENST00000274721 KIF27Q86VH2 1401 aa33.95■■■■□ 3.03
GFRA3-201ENST00000274721 UBTFP17480 764 aaKnown RBP33.95■■■■□ 3.03
GFRA3-201ENST00000274721 FGD5Q6ZNL6 1462 aa33.92■■■■□ 3.02
GFRA3-201ENST00000274721 CEP162Q5TB80 1403 aa33.92■■■■□ 3.02
GFRA3-201ENST00000274721 DNMBPQ6XZF7 1577 aa33.91■■■■□ 3.02
GFRA3-201ENST00000274721 PDS5BQ9NTI5 1447 aa33.89■■■■□ 3.02
GFRA3-201ENST00000274721 PRXQ9BXM0 1461 aa33.86■■■■□ 3.01
GFRA3-201ENST00000274721 RAPGEF2Q9Y4G8 1499 aa33.86■■■■□ 3.01
GFRA3-201ENST00000274721 TOPBP1Q92547 1522 aa33.85■■■■□ 3.01
GFRA3-201ENST00000274721 PCGF6Q9BYE7 350 aa33.82■■■■□ 3
GFRA3-201ENST00000274721 ERICH3Q5RHP9 1530 aa33.79■■■■□ 3
GFRA3-201ENST00000274721 CUX2O14529 1486 aa33.77■■■■□ 3
GFRA3-201ENST00000274721 URB2Q14146 1524 aaKnown RBP33.74■■■□□ 2.99
GFRA3-201ENST00000274721 POLA1P09884 1462 aaPredicted RBP33.73■■■□□ 2.99
GFRA3-201ENST00000274721 TRIM26Q12899 539 aaPredicted RBP33.72■■■□□ 2.99
GFRA3-201ENST00000274721 IGF1RP08069 1367 aa33.68■■■□□ 2.98
GFRA3-201ENST00000274721 KIF21AQ7Z4S6 1674 aa33.67■■■□□ 2.98
GFRA3-201ENST00000274721 ABCA10Q8WWZ4 1543 aa33.65■■■□□ 2.98
GFRA3-201ENST00000274721 RAD54L2Q9Y4B4 1467 aa33.63■■■□□ 2.97
GFRA3-201ENST00000274721 CLIP1P30622 1438 aa33.57■■■□□ 2.96
GFRA3-201ENST00000274721 CARMIL1Q5VZK9 1371 aa33.48■■■□□ 2.95
GFRA3-201ENST00000274721 WDR97A6NE52 1622 aa33.45■■■□□ 2.95
GFRA3-201ENST00000274721 MRC2Q9UBG0 1479 aa33.41■■■□□ 2.94
GFRA3-201ENST00000274721 PPARGC1BQ86YN6 1023 aaKnown RBP33.35■■■□□ 2.93
GFRA3-201ENST00000274721 VPS8Q8N3P4 1428 aa33.34■■■□□ 2.93
GFRA3-201ENST00000274721 TARBP1Q13395 1621 aaKnown RBP33.31■■■□□ 2.92
GFRA3-201ENST00000274721 ABCA5Q8WWZ7 1642 aa33.31■■■□□ 2.92
GFRA3-201ENST00000274721 TDRD9Q8NDG6 1382 aaKnown RBP33.28■■■□□ 2.92
GFRA3-201ENST00000274721 CUL7Q14999 1698 aa33.27■■■□□ 2.92
GFRA3-201ENST00000274721 RANGAP1P46060 587 aaPredicted RBP33.26■■■□□ 2.92
GFRA3-201ENST00000274721 GAPVD1Q14C86 1478 aa33.25■■■□□ 2.91
GFRA3-201ENST00000274721 WDR62O43379 1518 aa33.23■■■□□ 2.91
GFRA3-201ENST00000274721 ARAP1Q96P48 1450 aa33.21■■■□□ 2.91
GFRA3-201ENST00000274721 ARHGAP35Q9NRY4 1499 aa33.15■■■□□ 2.9
GFRA3-201ENST00000274721 HRCP23327 699 aa33.15■■■□□ 2.9
GFRA3-201ENST00000274721 ERCC6Q03468 1493 aa33.12■■■□□ 2.89
GFRA3-201ENST00000274721 IFT140Q96RY7 1462 aa33.07■■■□□ 2.89
GFRA3-201ENST00000274721 THOC2Q8NI27 1593 aaKnown RBP33.03■■■□□ 2.88
GFRA3-201ENST00000274721 AQRO60306 1485 aaKnown RBP eCLIP33■■■□□ 2.87
GFRA3-201ENST00000274721 APLP2Q06481 763 aa32.97■■■□□ 2.87
GFRA3-201ENST00000274721 PBRM1Q86U86 1689 aa32.96■■■□□ 2.87
GFRA3-201ENST00000274721 TTBK1Q5TCY1 1321 aaPredicted RBP32.96■■■□□ 2.87
GFRA3-201ENST00000274721 CTTNBP2Q8WZ74 1663 aa32.93■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms