RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 NISCHQ9Y2I1 1504 aa47.77■■■■■ 5.24
TRIM54-202ENST00000380075 CCDC180Q9P1Z9 1646 aa42.11■■■■■ 4.33
TRIM54-202ENST00000380075 ABCC9O60706 1549 aa40.91■■■■■ 4.14
TRIM54-202ENST00000380075 ZCCHC6Q5VYS8 1495 aaKnown RBP39.88■■■■□ 3.98
TRIM54-202ENST00000380075 DCAF8L2P0C7V8 631 aa39.88■■■■□ 3.97
TRIM54-202ENST00000380075 NACADO15069 1562 aa39.54■■■■□ 3.92
TRIM54-202ENST00000380075 DCAF1Q9Y4B6 1507 aa39.48■■■■□ 3.91
TRIM54-202ENST00000380075 RB1CC1Q8TDY2 1594 aa39.46■■■■□ 3.91
TRIM54-202ENST00000380075 MYO15BQ96JP2 1530 aa39.44■■■■□ 3.9
TRIM54-202ENST00000380075 SCRIBQ14160 1630 aa38.6■■■■□ 3.77
TRIM54-202ENST00000380075 UNC13AQ9UPW8 1703 aa38.55■■■■□ 3.76
TRIM54-202ENST00000380075 SHROOM4Q9ULL8 1493 aa38.45■■■■□ 3.75
TRIM54-202ENST00000380075 PABPN1Q86U42 306 aaKnown RBP eCLIP38.4■■■■□ 3.74
TRIM54-202ENST00000380075 BICRAQ9NZM4 1560 aa38.3■■■■□ 3.72
TRIM54-202ENST00000380075 SUPT5HO00267 1087 aaKnown RBP37.49■■■■□ 3.59
TRIM54-202ENST00000380075 EIF4G1Q04637 1599 aaKnown RBP37.24■■■■□ 3.55
TRIM54-202ENST00000380075 CECR2Q9BXF3 1484 aa37.23■■■■□ 3.55
TRIM54-202ENST00000380075 DNAJC5BQ9UF47 199 aa37.18■■■■□ 3.54
TRIM54-202ENST00000380075 CC2D2AQ9P2K1 1620 aa36.97■■■■□ 3.51
TRIM54-202ENST00000380075 BAZ1AQ9NRL2 1556 aaPredicted RBP36.95■■■■□ 3.51
TRIM54-202ENST00000380075 SMARCA4P51532 1647 aa36.93■■■■□ 3.5
TRIM54-202ENST00000380075 MROH2BQ7Z745 1585 aa36.86■■■■□ 3.49
TRIM54-202ENST00000380075 ATAD2BQ9ULI0 1458 aa36.65■■■■□ 3.46
TRIM54-202ENST00000380075 RSF1Q96T23 1441 aaPredicted RBP36.64■■■■□ 3.46
TRIM54-202ENST00000380075 SMARCA2P51531 1590 aa36.56■■■■□ 3.44
TRIM54-202ENST00000380075 NCAPD3P42695 1498 aa36.53■■■■□ 3.44
TRIM54-202ENST00000380075 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
TRIM54-202ENST00000380075 WIZO95785 1651 aa36.47■■■■□ 3.43
TRIM54-202ENST00000380075 CHIC1Q5VXU3 224 aa36.4■■■■□ 3.42
TRIM54-202ENST00000380075 BAZ1BQ9UIG0 1483 aaKnown RBP36.36■■■■□ 3.41
TRIM54-202ENST00000380075 HMGXB3Q12766 1538 aa36.34■■■■□ 3.41
TRIM54-202ENST00000380075 TOP2AP11388 1531 aaKnown RBP36.07■■■■□ 3.36
TRIM54-202ENST00000380075 CCDC88BA6NC98 1476 aa35.72■■■■□ 3.31
TRIM54-202ENST00000380075 NESP48681 1621 aa35.57■■■■□ 3.28
TRIM54-202ENST00000380075 CADPSQ9ULU8 1353 aa35.53■■■■□ 3.28
TRIM54-202ENST00000380075 LAMC3Q9Y6N6 1575 aa35.43■■■■□ 3.26
TRIM54-202ENST00000380075 CFTRP13569 1480 aa35.4■■■■□ 3.26
TRIM54-202ENST00000380075 PDS5BQ9NTI5 1447 aa35.23■■■■□ 3.23
TRIM54-202ENST00000380075 TRIM41Q8WV44 630 aa35.21■■■■□ 3.23
TRIM54-202ENST00000380075 ERCC6Q03468 1493 aa35.18■■■■□ 3.22
TRIM54-202ENST00000380075 FANCD2Q9BXW9 1451 aa35.11■■■■□ 3.21
TRIM54-202ENST00000380075 KIF21AQ7Z4S6 1674 aa35.05■■■■□ 3.2
TRIM54-202ENST00000380075 LOC105371045A0A1W2PR82 267 aa35.02■■■■□ 3.2
TRIM54-202ENST00000380075 PRDM2Q13029 1718 aa35.01■■■■□ 3.19
TRIM54-202ENST00000380075 CEP164Q9UPV0 1460 aa34.99■■■■□ 3.19
TRIM54-202ENST00000380075 MRC2Q9UBG0 1479 aa34.83■■■■□ 3.17
TRIM54-202ENST00000380075 THOC2Q8NI27 1593 aaKnown RBP34.81■■■■□ 3.16
TRIM54-202ENST00000380075 URB2Q14146 1524 aaKnown RBP34.73■■■■□ 3.15
TRIM54-202ENST00000380075 WDR62O43379 1518 aa34.67■■■■□ 3.14
TRIM54-202ENST00000380075 TOPBP1Q92547 1522 aa34.59■■■■□ 3.13
TRIM54-202ENST00000380075 ABCC8Q09428 1581 aa34.58■■■■□ 3.13
TRIM54-202ENST00000380075 CUX2O14529 1486 aa34.56■■■■□ 3.12
TRIM54-202ENST00000380075 DNMBPQ6XZF7 1577 aa34.55■■■■□ 3.12
TRIM54-202ENST00000380075 FAM9AQ8IZU1 332 aaPredicted RBP34.54■■■■□ 3.12
TRIM54-202ENST00000380075 CUX1P39880 1505 aa34.54■■■■□ 3.12
TRIM54-202ENST00000380075 WRNQ14191 1432 aaPredicted RBP eCLIP34.51■■■■□ 3.12
TRIM54-202ENST00000380075 PCGF6Q9BYE7 350 aa34.45■■■■□ 3.11
TRIM54-202ENST00000380075 SYNJ1O43426 1573 aa34.39■■■■□ 3.1
TRIM54-202ENST00000380075 POLA1P09884 1462 aaPredicted RBP34.35■■■■□ 3.09
TRIM54-202ENST00000380075 FGD5Q6ZNL6 1462 aa34.34■■■■□ 3.09
TRIM54-202ENST00000380075 TOP2BQ02880 1626 aa34.33■■■■□ 3.09
TRIM54-202ENST00000380075 BIVM-ERCC5R4GMW8 1640 aa34.28■■■■□ 3.08
TRIM54-202ENST00000380075 HRCP23327 699 aa34.28■■■■□ 3.08
TRIM54-202ENST00000380075 TRIM26Q12899 539 aaPredicted RBP34.26■■■■□ 3.08
TRIM54-202ENST00000380075 SOGA1O94964 1423 aa34.24■■■■□ 3.07
TRIM54-202ENST00000380075 EEA1Q15075 1411 aa34.24■■■■□ 3.07
TRIM54-202ENST00000380075 RAD54L2Q9Y4B4 1467 aa34.24■■■■□ 3.07
TRIM54-202ENST00000380075 IFT140Q96RY7 1462 aa34.22■■■■□ 3.07
TRIM54-202ENST00000380075 TARBP1Q13395 1621 aaKnown RBP34.14■■■■□ 3.06
TRIM54-202ENST00000380075 ZNF608Q9ULD9 1512 aaPredicted RBP34.1■■■■□ 3.05
TRIM54-202ENST00000380075 TDRD9Q8NDG6 1382 aaKnown RBP34.03■■■■□ 3.04
TRIM54-202ENST00000380075 ABCA10Q8WWZ4 1543 aa34■■■■□ 3.03
TRIM54-202ENST00000380075 EHMT2Q96KQ7 1210 aa34■■■■□ 3.03
TRIM54-202ENST00000380075 AQRO60306 1485 aaKnown RBP eCLIP34■■■■□ 3.03
TRIM54-202ENST00000380075 WDR97A6NE52 1622 aa33.93■■■■□ 3.02
TRIM54-202ENST00000380075 CSRNP3Q8WYN3 585 aa33.92■■■■□ 3.02
TRIM54-202ENST00000380075 EIF4G3O43432 1585 aaKnown RBP33.91■■■■□ 3.02
TRIM54-202ENST00000380075 TNIKQ9UKE5 1360 aa33.86■■■■□ 3.01
TRIM54-202ENST00000380075 GAPVD1Q14C86 1478 aa33.83■■■■□ 3.01
TRIM54-202ENST00000380075 RUSC2Q8N2Y8 1516 aa33.83■■■■□ 3.01
TRIM54-202ENST00000380075 ABCA5Q8WWZ7 1642 aa33.79■■■■□ 3
TRIM54-202ENST00000380075 GOLGA3Q08378 1498 aa33.78■■■■□ 3
TRIM54-202ENST00000380075 KIF27Q86VH2 1401 aa33.74■■■□□ 2.99
TRIM54-202ENST00000380075 GRIN2BQ13224 1484 aa33.73■■■□□ 2.99
TRIM54-202ENST00000380075 CEP162Q5TB80 1403 aa33.73■■■□□ 2.99
TRIM54-202ENST00000380075 KIF21BO75037 1637 aa33.7■■■□□ 2.99
TRIM54-202ENST00000380075 SNAPC4Q5SXM2 1469 aa33.64■■■□□ 2.98
TRIM54-202ENST00000380075 PBRM1Q86U86 1689 aa33.63■■■□□ 2.97
TRIM54-202ENST00000380075 IGF1RP08069 1367 aa33.59■■■□□ 2.97
TRIM54-202ENST00000380075 ERICH3Q5RHP9 1530 aa33.58■■■□□ 2.97
TRIM54-202ENST00000380075 MAGI1Q96QZ7 1491 aaPredicted RBP33.57■■■□□ 2.96
TRIM54-202ENST00000380075 UBTFP17480 764 aaKnown RBP33.56■■■□□ 2.96
TRIM54-202ENST00000380075 FBLN2P98095 1184 aa33.53■■■□□ 2.96
TRIM54-202ENST00000380075 CHMP7Q8WUX9 453 aaPredicted RBP33.48■■■□□ 2.95
TRIM54-202ENST00000380075 SYNJ2O15056 1496 aa33.45■■■□□ 2.95
TRIM54-202ENST00000380075 ZEB1P37275 1124 aaPredicted RBP33.45■■■□□ 2.94
TRIM54-202ENST00000380075 FHAD1B1AJZ9 1412 aa33.44■■■□□ 2.94
TRIM54-202ENST00000380075 ADAMTS12P58397 1594 aa33.44■■■□□ 2.94
TRIM54-202ENST00000380075 CARMIL1Q5VZK9 1371 aa33.39■■■□□ 2.94
TRIM54-202ENST00000380075 CHD1O14646 1710 aa33.35■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms