Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.37■■■□□ 2.61
PCDHA1Q9Y5I3 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
PCDHA1Q9Y5I3 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
PCDHA1Q9Y5I3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PCDHA1Q9Y5I3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA1Q9Y5I3 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA1Q9Y5I3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA1Q9Y5I3 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA1Q9Y5I3 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
PCDHA1Q9Y5I3 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCDHA1Q9Y5I3 AC120057.4-201ENST00000624722 1615 ntBASIC31.29■■■□□ 2.6
PCDHA1Q9Y5I3 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.29■■■□□ 2.6
PCDHA1Q9Y5I3 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.29■■■□□ 2.6
PCDHA1Q9Y5I3 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
PCDHA1Q9Y5I3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
PCDHA1Q9Y5I3 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.26■■■□□ 2.59
PCDHA1Q9Y5I3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC31.26■■■□□ 2.59
PCDHA1Q9Y5I3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC31.25■■■□□ 2.59
PCDHA1Q9Y5I3 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
PCDHA1Q9Y5I3 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.23■■■□□ 2.59
PCDHA1Q9Y5I3 AP006261.1-201ENST00000584783 668 ntBASIC31.22■■■□□ 2.59
PCDHA1Q9Y5I3 RPS2P35-201ENST00000443417 897 ntBASIC31.21■■■□□ 2.59
PCDHA1Q9Y5I3 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.21■■■□□ 2.59
PCDHA1Q9Y5I3 MIR762-201ENST00000390236 83 ntBASIC31.2■■■□□ 2.59
PCDHA1Q9Y5I3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC31.2■■■□□ 2.59
PCDHA1Q9Y5I3 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
PCDHA1Q9Y5I3 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.58
PCDHA1Q9Y5I3 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC31.19■■■□□ 2.58
PCDHA1Q9Y5I3 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.19■■■□□ 2.58
PCDHA1Q9Y5I3 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.19■■■□□ 2.58
PCDHA1Q9Y5I3 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
PCDHA1Q9Y5I3 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.19■■■□□ 2.58
PCDHA1Q9Y5I3 AL162393.1-201ENST00000437852 946 ntBASIC31.18■■■□□ 2.58
PCDHA1Q9Y5I3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PCDHA1Q9Y5I3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.17■■■□□ 2.58
PCDHA1Q9Y5I3 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
PCDHA1Q9Y5I3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PCDHA1Q9Y5I3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PCDHA1Q9Y5I3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
PCDHA1Q9Y5I3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PCDHA1Q9Y5I3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PCDHA1Q9Y5I3 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.12■■■□□ 2.57
PCDHA1Q9Y5I3 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC31.12■■■□□ 2.57
PCDHA1Q9Y5I3 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.11■■■□□ 2.57
PCDHA1Q9Y5I3 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.1■■■□□ 2.57
PCDHA1Q9Y5I3 MIR3665-201ENST00000578708 105 ntBASIC31.09■■■□□ 2.57
PCDHA1Q9Y5I3 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
PCDHA1Q9Y5I3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCDHA1Q9Y5I3 AC005559.1-201ENST00000589661 871 ntBASIC31.07■■■□□ 2.56
PCDHA1Q9Y5I3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PCDHA1Q9Y5I3 DUX4L28-201ENST00000623687 678 ntBASIC31.06■■■□□ 2.56
PCDHA1Q9Y5I3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.06■■■□□ 2.56
PCDHA1Q9Y5I3 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.05■■■□□ 2.56
PCDHA1Q9Y5I3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
PCDHA1Q9Y5I3 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
PCDHA1Q9Y5I3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PCDHA1Q9Y5I3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PCDHA1Q9Y5I3 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
PCDHA1Q9Y5I3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
PCDHA1Q9Y5I3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PCDHA1Q9Y5I3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
PCDHA1Q9Y5I3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
PCDHA1Q9Y5I3 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
PCDHA1Q9Y5I3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC30.98■■■□□ 2.55
PCDHA1Q9Y5I3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCDHA1Q9Y5I3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCDHA1Q9Y5I3 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
PCDHA1Q9Y5I3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC30.96■■■□□ 2.55
PCDHA1Q9Y5I3 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.95■■■□□ 2.55
PCDHA1Q9Y5I3 AC087741.3-201ENST00000624270 1347 ntBASIC30.95■■■□□ 2.54
PCDHA1Q9Y5I3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
PCDHA1Q9Y5I3 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.93■■■□□ 2.54
PCDHA1Q9Y5I3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC30.92■■■□□ 2.54
PCDHA1Q9Y5I3 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
PCDHA1Q9Y5I3 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
PCDHA1Q9Y5I3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC30.91■■■□□ 2.54
PCDHA1Q9Y5I3 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PCDHA1Q9Y5I3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
PCDHA1Q9Y5I3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
PCDHA1Q9Y5I3 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
PCDHA1Q9Y5I3 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC30.87■■■□□ 2.53
PCDHA1Q9Y5I3 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
PCDHA1Q9Y5I3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
PCDHA1Q9Y5I3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
PCDHA1Q9Y5I3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC30.84■■■□□ 2.53
PCDHA1Q9Y5I3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PCDHA1Q9Y5I3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
PCDHA1Q9Y5I3 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
PCDHA1Q9Y5I3 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
PCDHA1Q9Y5I3 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.81■■■□□ 2.52
PCDHA1Q9Y5I3 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
PCDHA1Q9Y5I3 AL161658.1-201ENST00000623641 1967 ntBASIC30.79■■■□□ 2.52
PCDHA1Q9Y5I3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.79■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms