Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC33.94■■■■□ 3.02
ZC3H4Q9UPT8 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC33.94■■■■□ 3.02
ZC3H4Q9UPT8 HSD17B1P1-201ENST00000590052 955 ntBASIC33.9■■■■□ 3.02
ZC3H4Q9UPT8 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC33.9■■■■□ 3.02
ZC3H4Q9UPT8 DUX4L29-201ENST00000425409 679 ntBASIC33.89■■■■□ 3.02
ZC3H4Q9UPT8 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
ZC3H4Q9UPT8 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
ZC3H4Q9UPT8 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC33.87■■■■□ 3.01
ZC3H4Q9UPT8 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC33.87■■■■□ 3.01
ZC3H4Q9UPT8 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
ZC3H4Q9UPT8 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC33.85■■■■□ 3.01
ZC3H4Q9UPT8 CALM3-209ENST00000597743 577 ntTSL 4 BASIC33.84■■■■□ 3.01
ZC3H4Q9UPT8 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC33.84■■■■□ 3.01
ZC3H4Q9UPT8 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC33.81■■■■□ 3
ZC3H4Q9UPT8 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC33.81■■■■□ 3
ZC3H4Q9UPT8 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC33.79■■■■□ 3
ZC3H4Q9UPT8 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC33.79■■■■□ 3
ZC3H4Q9UPT8 RPS2-209ENST00000529806 993 ntTSL 3 BASIC33.79■■■■□ 3
ZC3H4Q9UPT8 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC33.78■■■■□ 3
ZC3H4Q9UPT8 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC33.78■■■■□ 3
ZC3H4Q9UPT8 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC33.75■■■□□ 2.99
ZC3H4Q9UPT8 BRD4-212ENST00000630599 726 ntTSL 2 BASIC33.74■■■□□ 2.99
ZC3H4Q9UPT8 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
ZC3H4Q9UPT8 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC33.73■■■□□ 2.99
ZC3H4Q9UPT8 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC33.72■■■□□ 2.99
ZC3H4Q9UPT8 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC33.71■■■□□ 2.99
ZC3H4Q9UPT8 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC33.71■■■□□ 2.99
ZC3H4Q9UPT8 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC33.71■■■□□ 2.99
ZC3H4Q9UPT8 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC33.71■■■□□ 2.99
ZC3H4Q9UPT8 MIR3648-2-201ENST00000581792 180 ntBASIC33.69■■■□□ 2.98
ZC3H4Q9UPT8 MIR3648-1-201ENST00000615959 180 ntBASIC33.69■■■□□ 2.98
ZC3H4Q9UPT8 RNF166-209ENST00000567844 633 ntTSL 5 BASIC33.65■■■□□ 2.98
ZC3H4Q9UPT8 AC021231.2-201ENST00000594613 730 ntBASIC33.65■■■□□ 2.98
ZC3H4Q9UPT8 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC33.64■■■□□ 2.98
ZC3H4Q9UPT8 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC33.64■■■□□ 2.98
ZC3H4Q9UPT8 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC33.63■■■□□ 2.97
ZC3H4Q9UPT8 AC016575.1-201ENST00000607026 382 ntBASIC33.63■■■□□ 2.97
ZC3H4Q9UPT8 GDI1-215ENST00000630693 786 ntTSL 4 BASIC33.63■■■□□ 2.97
ZC3H4Q9UPT8 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC33.63■■■□□ 2.97
ZC3H4Q9UPT8 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
ZC3H4Q9UPT8 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC33.6■■■□□ 2.97
ZC3H4Q9UPT8 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
ZC3H4Q9UPT8 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
ZC3H4Q9UPT8 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
ZC3H4Q9UPT8 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
ZC3H4Q9UPT8 AGPS-202ENST00000409888 815 ntTSL 4 BASIC33.57■■■□□ 2.97
ZC3H4Q9UPT8 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC33.56■■■□□ 2.96
ZC3H4Q9UPT8 WASH5P-204ENST00000632292 975 ntBASIC33.56■■■□□ 2.96
ZC3H4Q9UPT8 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
ZC3H4Q9UPT8 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC33.53■■■□□ 2.96
ZC3H4Q9UPT8 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC33.53■■■□□ 2.96
ZC3H4Q9UPT8 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
ZC3H4Q9UPT8 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC33.49■■■□□ 2.95
ZC3H4Q9UPT8 ABHD17AP3-201ENST00000503096 1137 ntBASIC33.48■■■□□ 2.95
ZC3H4Q9UPT8 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC33.47■■■□□ 2.95
ZC3H4Q9UPT8 CIB2-204ENST00000557846 934 ntTSL 3 BASIC33.47■■■□□ 2.95
ZC3H4Q9UPT8 CR559946.2-201ENST00000623684 991 ntBASIC33.47■■■□□ 2.95
ZC3H4Q9UPT8 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
ZC3H4Q9UPT8 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC33.46■■■□□ 2.95
ZC3H4Q9UPT8 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC33.46■■■□□ 2.95
ZC3H4Q9UPT8 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC33.44■■■□□ 2.94
ZC3H4Q9UPT8 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC33.44■■■□□ 2.94
ZC3H4Q9UPT8 LINC01971-201ENST00000617888 1048 ntBASIC33.43■■■□□ 2.94
ZC3H4Q9UPT8 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
ZC3H4Q9UPT8 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC33.42■■■□□ 2.94
ZC3H4Q9UPT8 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC33.42■■■□□ 2.94
ZC3H4Q9UPT8 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 DUX4L11-201ENST00000611504 1267 ntBASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 DUX4L12-201ENST00000614593 1267 ntBASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 DUX4L14-201ENST00000621227 1267 ntBASIC33.41■■■□□ 2.94
ZC3H4Q9UPT8 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC33.4■■■□□ 2.94
ZC3H4Q9UPT8 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC33.4■■■□□ 2.94
ZC3H4Q9UPT8 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
ZC3H4Q9UPT8 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
ZC3H4Q9UPT8 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
ZC3H4Q9UPT8 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
ZC3H4Q9UPT8 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC33.37■■■□□ 2.93
ZC3H4Q9UPT8 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC33.37■■■□□ 2.93
ZC3H4Q9UPT8 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC33.37■■■□□ 2.93
ZC3H4Q9UPT8 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC33.35■■■□□ 2.93
ZC3H4Q9UPT8 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC33.34■■■□□ 2.93
ZC3H4Q9UPT8 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC33.33■■■□□ 2.93
ZC3H4Q9UPT8 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
ZC3H4Q9UPT8 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC33.33■■■□□ 2.93
ZC3H4Q9UPT8 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.93
ZC3H4Q9UPT8 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC33.32■■■□□ 2.92
ZC3H4Q9UPT8 AC108673.1-201ENST00000510422 1159 ntBASIC33.31■■■□□ 2.92
ZC3H4Q9UPT8 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC33.31■■■□□ 2.92
ZC3H4Q9UPT8 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC33.31■■■□□ 2.92
ZC3H4Q9UPT8 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC33.3■■■□□ 2.92
ZC3H4Q9UPT8 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC33.3■■■□□ 2.92
ZC3H4Q9UPT8 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
ZC3H4Q9UPT8 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC33.29■■■□□ 2.92
ZC3H4Q9UPT8 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
ZC3H4Q9UPT8 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC33.28■■■□□ 2.92
ZC3H4Q9UPT8 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC33.28■■■□□ 2.92
ZC3H4Q9UPT8 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC33.28■■■□□ 2.92
ZC3H4Q9UPT8 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms