Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.44■■■□□ 2.46
BLOC1S4Q9NUP1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
BLOC1S4Q9NUP1 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
BLOC1S4Q9NUP1 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.43■■■□□ 2.46
BLOC1S4Q9NUP1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
BLOC1S4Q9NUP1 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC30.42■■■□□ 2.46
BLOC1S4Q9NUP1 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
BLOC1S4Q9NUP1 SETD8P1-201ENST00000623146 1180 ntBASIC30.4■■■□□ 2.46
BLOC1S4Q9NUP1 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC30.38■■■□□ 2.45
BLOC1S4Q9NUP1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
BLOC1S4Q9NUP1 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.38■■■□□ 2.45
BLOC1S4Q9NUP1 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
BLOC1S4Q9NUP1 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
BLOC1S4Q9NUP1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.36■■■□□ 2.45
BLOC1S4Q9NUP1 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BLOC1S4Q9NUP1 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC30.34■■■□□ 2.45
BLOC1S4Q9NUP1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BLOC1S4Q9NUP1 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.33■■■□□ 2.45
BLOC1S4Q9NUP1 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
BLOC1S4Q9NUP1 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC30.31■■■□□ 2.44
BLOC1S4Q9NUP1 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.3■■■□□ 2.44
BLOC1S4Q9NUP1 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
BLOC1S4Q9NUP1 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
BLOC1S4Q9NUP1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
BLOC1S4Q9NUP1 WASH5P-204ENST00000632292 975 ntBASIC30.28■■■□□ 2.44
BLOC1S4Q9NUP1 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
BLOC1S4Q9NUP1 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
BLOC1S4Q9NUP1 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
BLOC1S4Q9NUP1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
BLOC1S4Q9NUP1 AC136428.2-201ENST00000563187 214 ntBASIC30.25■■■□□ 2.43
BLOC1S4Q9NUP1 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.24■■■□□ 2.43
BLOC1S4Q9NUP1 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.22■■■□□ 2.43
BLOC1S4Q9NUP1 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
BLOC1S4Q9NUP1 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.21■■■□□ 2.43
BLOC1S4Q9NUP1 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.21■■■□□ 2.43
BLOC1S4Q9NUP1 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
BLOC1S4Q9NUP1 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
BLOC1S4Q9NUP1 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
BLOC1S4Q9NUP1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
BLOC1S4Q9NUP1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC30.19■■■□□ 2.42
BLOC1S4Q9NUP1 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC30.18■■■□□ 2.42
BLOC1S4Q9NUP1 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
BLOC1S4Q9NUP1 AL161658.1-201ENST00000623641 1967 ntBASIC30.17■■■□□ 2.42
BLOC1S4Q9NUP1 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
BLOC1S4Q9NUP1 AC097358.2-201ENST00000607541 1159 ntBASIC30.16■■■□□ 2.42
BLOC1S4Q9NUP1 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.15■■■□□ 2.42
BLOC1S4Q9NUP1 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 CAHM-201ENST00000604200 896 ntBASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
BLOC1S4Q9NUP1 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.12■■■□□ 2.41
BLOC1S4Q9NUP1 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC30.12■■■□□ 2.41
BLOC1S4Q9NUP1 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
BLOC1S4Q9NUP1 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC30.11■■■□□ 2.41
BLOC1S4Q9NUP1 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.11■■■□□ 2.41
BLOC1S4Q9NUP1 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
BLOC1S4Q9NUP1 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
BLOC1S4Q9NUP1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC30.09■■■□□ 2.41
BLOC1S4Q9NUP1 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
BLOC1S4Q9NUP1 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
BLOC1S4Q9NUP1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC30.08■■■□□ 2.41
BLOC1S4Q9NUP1 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
BLOC1S4Q9NUP1 AL391121.1-201ENST00000607967 1349 ntBASIC30.07■■■□□ 2.4
BLOC1S4Q9NUP1 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
BLOC1S4Q9NUP1 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC30.07■■■□□ 2.4
BLOC1S4Q9NUP1 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC30.06■■■□□ 2.4
BLOC1S4Q9NUP1 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
BLOC1S4Q9NUP1 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
BLOC1S4Q9NUP1 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
BLOC1S4Q9NUP1 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.05■■■□□ 2.4
BLOC1S4Q9NUP1 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.05■■■□□ 2.4
BLOC1S4Q9NUP1 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
BLOC1S4Q9NUP1 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
BLOC1S4Q9NUP1 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.03■■■□□ 2.4
BLOC1S4Q9NUP1 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC30.02■■■□□ 2.4
BLOC1S4Q9NUP1 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC30.01■■■□□ 2.39
BLOC1S4Q9NUP1 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC30■■■□□ 2.39
BLOC1S4Q9NUP1 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30■■■□□ 2.39
BLOC1S4Q9NUP1 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC29.97■■■□□ 2.39
BLOC1S4Q9NUP1 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC29.97■■■□□ 2.39
BLOC1S4Q9NUP1 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
BLOC1S4Q9NUP1 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.96■■■□□ 2.39
BLOC1S4Q9NUP1 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.96■■■□□ 2.39
BLOC1S4Q9NUP1 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.95■■■□□ 2.39
BLOC1S4Q9NUP1 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC29.95■■■□□ 2.38
BLOC1S4Q9NUP1 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.94■■■□□ 2.38
BLOC1S4Q9NUP1 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.94■■■□□ 2.38
BLOC1S4Q9NUP1 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
BLOC1S4Q9NUP1 EBPL-202ENST00000378268 680 ntTSL 3 BASIC29.93■■■□□ 2.38
BLOC1S4Q9NUP1 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
BLOC1S4Q9NUP1 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.93■■■□□ 2.38
BLOC1S4Q9NUP1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.92■■■□□ 2.38
BLOC1S4Q9NUP1 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC29.92■■■□□ 2.38
BLOC1S4Q9NUP1 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC29.92■■■□□ 2.38
BLOC1S4Q9NUP1 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC29.91■■■□□ 2.38
BLOC1S4Q9NUP1 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC29.91■■■□□ 2.38
BLOC1S4Q9NUP1 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.9■■■□□ 2.38
BLOC1S4Q9NUP1 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.9■■■□□ 2.38
Retrieved 100 of 98,524 protein–RNA pairs in 13.3 ms