Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC28.47■■■□□ 2.15
SLC44A3Q8N4M1 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC28.46■■■□□ 2.15
SLC44A3Q8N4M1 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC28.46■■■□□ 2.15
SLC44A3Q8N4M1 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.14
SLC44A3Q8N4M1 HGH1-207ENST00000628266 258 ntTSL 5 BASIC28.43■■■□□ 2.14
SLC44A3Q8N4M1 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.42■■■□□ 2.14
SLC44A3Q8N4M1 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC28.42■■■□□ 2.14
SLC44A3Q8N4M1 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC28.42■■■□□ 2.14
SLC44A3Q8N4M1 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC28.41■■■□□ 2.14
SLC44A3Q8N4M1 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.4■■■□□ 2.14
SLC44A3Q8N4M1 WASH5P-204ENST00000632292 975 ntBASIC28.4■■■□□ 2.14
SLC44A3Q8N4M1 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
SLC44A3Q8N4M1 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC28.38■■■□□ 2.13
SLC44A3Q8N4M1 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC28.38■■■□□ 2.13
SLC44A3Q8N4M1 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
SLC44A3Q8N4M1 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
SLC44A3Q8N4M1 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
SLC44A3Q8N4M1 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC28.37■■■□□ 2.13
SLC44A3Q8N4M1 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
SLC44A3Q8N4M1 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC28.35■■■□□ 2.13
SLC44A3Q8N4M1 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC28.35■■■□□ 2.13
SLC44A3Q8N4M1 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC28.34■■■□□ 2.13
SLC44A3Q8N4M1 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SLC44A3Q8N4M1 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
SLC44A3Q8N4M1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
SLC44A3Q8N4M1 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC28.32■■■□□ 2.12
SLC44A3Q8N4M1 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
SLC44A3Q8N4M1 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
SLC44A3Q8N4M1 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
SLC44A3Q8N4M1 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.3■■■□□ 2.12
SLC44A3Q8N4M1 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
SLC44A3Q8N4M1 DUX4L29-201ENST00000425409 679 ntBASIC28.29■■■□□ 2.12
SLC44A3Q8N4M1 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
SLC44A3Q8N4M1 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC28.28■■■□□ 2.12
SLC44A3Q8N4M1 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
SLC44A3Q8N4M1 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC28.26■■■□□ 2.11
SLC44A3Q8N4M1 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
SLC44A3Q8N4M1 RPS2-202ENST00000526522 924 ntTSL 2 BASIC28.26■■■□□ 2.11
SLC44A3Q8N4M1 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC28.25■■■□□ 2.11
SLC44A3Q8N4M1 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC28.25■■■□□ 2.11
SLC44A3Q8N4M1 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC28.24■■■□□ 2.11
SLC44A3Q8N4M1 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
SLC44A3Q8N4M1 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
SLC44A3Q8N4M1 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
SLC44A3Q8N4M1 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
SLC44A3Q8N4M1 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC28.19■■■□□ 2.1
SLC44A3Q8N4M1 MIR4449-201ENST00000578365 66 ntBASIC28.19■■■□□ 2.1
SLC44A3Q8N4M1 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
SLC44A3Q8N4M1 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
SLC44A3Q8N4M1 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
SLC44A3Q8N4M1 AC021231.2-201ENST00000594613 730 ntBASIC28.16■■■□□ 2.1
SLC44A3Q8N4M1 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
SLC44A3Q8N4M1 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
SLC44A3Q8N4M1 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
SLC44A3Q8N4M1 MIR639-201ENST00000384974 98 ntBASIC28.14■■■□□ 2.1
SLC44A3Q8N4M1 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
SLC44A3Q8N4M1 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC28.13■■■□□ 2.09
SLC44A3Q8N4M1 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC28.12■■■□□ 2.09
SLC44A3Q8N4M1 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.12■■■□□ 2.09
SLC44A3Q8N4M1 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
SLC44A3Q8N4M1 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SLC44A3Q8N4M1 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
SLC44A3Q8N4M1 MACF1-219ENST00000484793 834 ntTSL 2 BASIC28.09■■■□□ 2.09
SLC44A3Q8N4M1 CIB2-204ENST00000557846 934 ntTSL 3 BASIC28.09■■■□□ 2.09
SLC44A3Q8N4M1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC28.09■■■□□ 2.09
SLC44A3Q8N4M1 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC28.07■■■□□ 2.08
SLC44A3Q8N4M1 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.06■■■□□ 2.08
SLC44A3Q8N4M1 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC28.06■■■□□ 2.08
SLC44A3Q8N4M1 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC28.04■■■□□ 2.08
SLC44A3Q8N4M1 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC28.04■■■□□ 2.08
SLC44A3Q8N4M1 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC28.03■■■□□ 2.08
SLC44A3Q8N4M1 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC28.02■■■□□ 2.08
SLC44A3Q8N4M1 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC28■■■□□ 2.07
SLC44A3Q8N4M1 RNF166-209ENST00000567844 633 ntTSL 5 BASIC28■■■□□ 2.07
SLC44A3Q8N4M1 MIR3648-2-201ENST00000581792 180 ntBASIC28■■■□□ 2.07
SLC44A3Q8N4M1 MIR3648-1-201ENST00000615959 180 ntBASIC28■■■□□ 2.07
SLC44A3Q8N4M1 AC016575.1-201ENST00000607026 382 ntBASIC27.99■■■□□ 2.07
SLC44A3Q8N4M1 AC108673.1-201ENST00000510422 1159 ntBASIC27.98■■■□□ 2.07
SLC44A3Q8N4M1 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.98■■■□□ 2.07
SLC44A3Q8N4M1 MIR6090-201ENST00000622481 60 ntBASIC27.97■■■□□ 2.07
SLC44A3Q8N4M1 GDI1-215ENST00000630693 786 ntTSL 4 BASIC27.97■■■□□ 2.07
SLC44A3Q8N4M1 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SLC44A3Q8N4M1 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.96■■■□□ 2.07
SLC44A3Q8N4M1 CALM3-209ENST00000597743 577 ntTSL 4 BASIC27.96■■■□□ 2.07
SLC44A3Q8N4M1 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SLC44A3Q8N4M1 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SLC44A3Q8N4M1 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC27.95■■■□□ 2.06
SLC44A3Q8N4M1 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC27.95■■■□□ 2.06
SLC44A3Q8N4M1 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC27.94■■■□□ 2.06
SLC44A3Q8N4M1 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC27.94■■■□□ 2.06
SLC44A3Q8N4M1 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC27.93■■■□□ 2.06
SLC44A3Q8N4M1 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC27.93■■■□□ 2.06
SLC44A3Q8N4M1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC27.92■■■□□ 2.06
SLC44A3Q8N4M1 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC27.92■■■□□ 2.06
SLC44A3Q8N4M1 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.9■■■□□ 2.06
SLC44A3Q8N4M1 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC27.89■■■□□ 2.06
SLC44A3Q8N4M1 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC27.89■■■□□ 2.06
SLC44A3Q8N4M1 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC27.89■■■□□ 2.06
SLC44A3Q8N4M1 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC27.88■■■□□ 2.05
SLC44A3Q8N4M1 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC27.88■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms