Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS13DQ5THJ4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS13DQ5THJ4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
VPS13DQ5THJ4 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS13DQ5THJ4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS13DQ5THJ4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS13DQ5THJ4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC18.78■□□□□ 0.6
VPS13DQ5THJ4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 WASH5P-204ENST00000632292 975 ntBASIC18.77■□□□□ 0.59
VPS13DQ5THJ4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13DQ5THJ4 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13DQ5THJ4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS13DQ5THJ4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS13DQ5THJ4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
VPS13DQ5THJ4 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS13DQ5THJ4 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS13DQ5THJ4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS13DQ5THJ4 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
VPS13DQ5THJ4 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS13DQ5THJ4 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS13DQ5THJ4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 AC021231.2-201ENST00000594613 730 ntBASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
VPS13DQ5THJ4 ZNRF2P2-203ENST00000454624 420 ntBASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VPS13DQ5THJ4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 MIR4449-201ENST00000578365 66 ntBASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS13DQ5THJ4 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS13DQ5THJ4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13DQ5THJ4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS13DQ5THJ4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
VPS13DQ5THJ4 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
VPS13DQ5THJ4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
VPS13DQ5THJ4 MIR639-201ENST00000384974 98 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MIR3648-2-201ENST00000581792 180 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MIR3648-1-201ENST00000615959 180 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 CR559946.2-201ENST00000623684 991 ntBASIC18.56■□□□□ 0.56
VPS13DQ5THJ4 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 HSD17B1P1-201ENST00000590052 955 ntBASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13DQ5THJ4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13DQ5THJ4 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 MIR6090-201ENST00000622481 60 ntBASIC18.53■□□□□ 0.56
VPS13DQ5THJ4 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 RNF166-209ENST00000567844 633 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13DQ5THJ4 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13DQ5THJ4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC18.51■□□□□ 0.55
VPS13DQ5THJ4 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13DQ5THJ4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13DQ5THJ4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC18.48■□□□□ 0.55
VPS13DQ5THJ4 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13DQ5THJ4 DUX4L29-201ENST00000425409 679 ntBASIC18.46■□□□□ 0.55
VPS13DQ5THJ4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13DQ5THJ4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms