Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 CHML-205ENST00000638160 705 ntTSL 3 BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TRAV40A0A0B4J280 DENR-202ENST00000455982 1052 ntTSL 5 BASIC22.2■■□□□ 1.14
TRAV40A0A0B4J280 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
TRAV40A0A0B4J280 DUX4L28-201ENST00000623687 678 ntBASIC22.19■■□□□ 1.14
TRAV40A0A0B4J280 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 AC005559.1-201ENST00000589661 871 ntBASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC22.18■■□□□ 1.14
TRAV40A0A0B4J280 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC22.17■■□□□ 1.14
TRAV40A0A0B4J280 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC22.17■■□□□ 1.14
TRAV40A0A0B4J280 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC22.16■■□□□ 1.14
TRAV40A0A0B4J280 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV40A0A0B4J280 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
TRAV40A0A0B4J280 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
TRAV40A0A0B4J280 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
TRAV40A0A0B4J280 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC22.12■■□□□ 1.13
TRAV40A0A0B4J280 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.12■■□□□ 1.13
TRAV40A0A0B4J280 AC087741.3-201ENST00000624270 1347 ntBASIC22.11■■□□□ 1.13
TRAV40A0A0B4J280 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC22.11■■□□□ 1.13
TRAV40A0A0B4J280 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV40A0A0B4J280 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
TRAV40A0A0B4J280 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 AC044849.2-201ENST00000606596 710 ntBASIC22.09■■□□□ 1.13
TRAV40A0A0B4J280 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC22.08■■□□□ 1.13
TRAV40A0A0B4J280 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
TRAV40A0A0B4J280 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC22.08■■□□□ 1.12
TRAV40A0A0B4J280 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
TRAV40A0A0B4J280 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
TRAV40A0A0B4J280 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
TRAV40A0A0B4J280 RPS2-209ENST00000529806 993 ntTSL 3 BASIC22.04■■□□□ 1.12
TRAV40A0A0B4J280 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
TRAV40A0A0B4J280 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
TRAV40A0A0B4J280 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC22.01■■□□□ 1.11
TRAV40A0A0B4J280 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC22■■□□□ 1.11
TRAV40A0A0B4J280 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRAV40A0A0B4J280 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV40A0A0B4J280 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRAV40A0A0B4J280 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV40A0A0B4J280 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
TRAV40A0A0B4J280 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRAV40A0A0B4J280 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
TRAV40A0A0B4J280 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRAV40A0A0B4J280 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV40A0A0B4J280 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRAV40A0A0B4J280 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 AC120057.4-201ENST00000624722 1615 ntBASIC21.93■■□□□ 1.1
TRAV40A0A0B4J280 MLEC-202ENST00000412616 841 ntTSL 3 BASIC21.92■■□□□ 1.1
TRAV40A0A0B4J280 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV40A0A0B4J280 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TRAV40A0A0B4J280 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TRAV40A0A0B4J280 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TRAV40A0A0B4J280 ABHD17AP4-201ENST00000411545 909 ntBASIC21.88■■□□□ 1.09
TRAV40A0A0B4J280 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC21.87■■□□□ 1.09
TRAV40A0A0B4J280 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC21.86■■□□□ 1.09
TRAV40A0A0B4J280 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC21.85■■□□□ 1.09
TRAV40A0A0B4J280 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
TRAV40A0A0B4J280 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 MIR7108-201ENST00000614319 87 ntBASIC21.83■■□□□ 1.09
TRAV40A0A0B4J280 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms