Protein–RNA interactions for Protein: A0A087WSZ9

TRAV30, T-cell receptor alpha variable 30 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV30A0A087WSZ9 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC21.22■□□□□ 0.99
TRAV30A0A087WSZ9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TRAV30A0A087WSZ9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.18■□□□□ 0.98
TRAV30A0A087WSZ9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV30A0A087WSZ9 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV30A0A087WSZ9 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV30A0A087WSZ9 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV30A0A087WSZ9 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV30A0A087WSZ9 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC21.17■□□□□ 0.98
TRAV30A0A087WSZ9 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV30A0A087WSZ9 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
TRAV30A0A087WSZ9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV30A0A087WSZ9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TRAV30A0A087WSZ9 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
TRAV30A0A087WSZ9 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV30A0A087WSZ9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.14■□□□□ 0.98
TRAV30A0A087WSZ9 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
TRAV30A0A087WSZ9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV30A0A087WSZ9 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV30A0A087WSZ9 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRAV30A0A087WSZ9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV30A0A087WSZ9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV30A0A087WSZ9 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TRAV30A0A087WSZ9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.07■□□□□ 0.96
TRAV30A0A087WSZ9 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV30A0A087WSZ9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV30A0A087WSZ9 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
TRAV30A0A087WSZ9 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV30A0A087WSZ9 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV30A0A087WSZ9 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV30A0A087WSZ9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAV30A0A087WSZ9 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV30A0A087WSZ9 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
TRAV30A0A087WSZ9 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.99■□□□□ 0.95
TRAV30A0A087WSZ9 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRAV30A0A087WSZ9 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV30A0A087WSZ9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV30A0A087WSZ9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV30A0A087WSZ9 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV30A0A087WSZ9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAV30A0A087WSZ9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TRAV30A0A087WSZ9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV30A0A087WSZ9 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAV30A0A087WSZ9 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAV30A0A087WSZ9 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC20.95■□□□□ 0.95
TRAV30A0A087WSZ9 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAV30A0A087WSZ9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV30A0A087WSZ9 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.94■□□□□ 0.94
TRAV30A0A087WSZ9 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAV30A0A087WSZ9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAV30A0A087WSZ9 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TRAV30A0A087WSZ9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC20.93■□□□□ 0.94
TRAV30A0A087WSZ9 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV30A0A087WSZ9 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRAV30A0A087WSZ9 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV30A0A087WSZ9 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
TRAV30A0A087WSZ9 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TRAV30A0A087WSZ9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV30A0A087WSZ9 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TRAV30A0A087WSZ9 ABCB10P1-201ENST00000614297 2181 ntBASIC20.9■□□□□ 0.94
TRAV30A0A087WSZ9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRAV30A0A087WSZ9 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC20.89■□□□□ 0.93
TRAV30A0A087WSZ9 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV30A0A087WSZ9 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV30A0A087WSZ9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TRAV30A0A087WSZ9 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRAV30A0A087WSZ9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV30A0A087WSZ9 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRAV30A0A087WSZ9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.87■□□□□ 0.93
TRAV30A0A087WSZ9 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV30A0A087WSZ9 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV30A0A087WSZ9 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV30A0A087WSZ9 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRAV30A0A087WSZ9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRAV30A0A087WSZ9 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV30A0A087WSZ9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC20.85■□□□□ 0.93
TRAV30A0A087WSZ9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRAV30A0A087WSZ9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV30A0A087WSZ9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRAV30A0A087WSZ9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.84■□□□□ 0.93
TRAV30A0A087WSZ9 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRAV30A0A087WSZ9 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC20.83■□□□□ 0.93
TRAV30A0A087WSZ9 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV30A0A087WSZ9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRAV30A0A087WSZ9 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV30A0A087WSZ9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV30A0A087WSZ9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV30A0A087WSZ9 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRAV30A0A087WSZ9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRAV30A0A087WSZ9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
TRAV30A0A087WSZ9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TRAV30A0A087WSZ9 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
TRAV30A0A087WSZ9 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
TRAV30A0A087WSZ9 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms