Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC44.06■■■■■ 4.64
COL17A1Q9UMD9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC44.06■■■■■ 4.64
COL17A1Q9UMD9 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC44.02■■■■■ 4.64
COL17A1Q9UMD9 MIR3665-201ENST00000578708 105 ntBASIC44.02■■■■■ 4.64
COL17A1Q9UMD9 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC44■■■■■ 4.63
COL17A1Q9UMD9 DUX4L28-201ENST00000623687 678 ntBASIC43.97■■■■■ 4.63
COL17A1Q9UMD9 AL133380.1-201ENST00000506013 324 ntBASIC43.96■■■■■ 4.63
COL17A1Q9UMD9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC43.95■■■■■ 4.63
COL17A1Q9UMD9 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC43.92■■■■■ 4.62
COL17A1Q9UMD9 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC43.89■■■■■ 4.62
COL17A1Q9UMD9 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC43.88■■■■■ 4.61
COL17A1Q9UMD9 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC43.88■■■■■ 4.61
COL17A1Q9UMD9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC43.85■■■■■ 4.61
COL17A1Q9UMD9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC43.85■■■■■ 4.61
COL17A1Q9UMD9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC43.84■■■■■ 4.61
COL17A1Q9UMD9 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC43.83■■■■■ 4.61
COL17A1Q9UMD9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC43.82■■■■■ 4.61
COL17A1Q9UMD9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC43.81■■■■■ 4.6
COL17A1Q9UMD9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC43.79■■■■■ 4.6
COL17A1Q9UMD9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC43.77■■■■■ 4.6
COL17A1Q9UMD9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC43.77■■■■■ 4.6
COL17A1Q9UMD9 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC43.76■■■■■ 4.6
COL17A1Q9UMD9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC43.76■■■■■ 4.6
COL17A1Q9UMD9 AC145285.7-201ENST00000614819 1539 ntBASIC43.75■■■■■ 4.59
COL17A1Q9UMD9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC43.72■■■■■ 4.59
COL17A1Q9UMD9 AC044849.2-201ENST00000606596 710 ntBASIC43.71■■■■■ 4.59
COL17A1Q9UMD9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC43.7■■■■■ 4.59
COL17A1Q9UMD9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC43.66■■■■■ 4.58
COL17A1Q9UMD9 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC43.66■■■■■ 4.58
COL17A1Q9UMD9 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC43.64■■■■■ 4.58
COL17A1Q9UMD9 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC43.64■■■■■ 4.58
COL17A1Q9UMD9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC43.64■■■■■ 4.58
COL17A1Q9UMD9 ZNRF2P2-203ENST00000454624 420 ntBASIC43.61■■■■■ 4.57
COL17A1Q9UMD9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC43.61■■■■■ 4.57
COL17A1Q9UMD9 MVK-208ENST00000539696 608 ntTSL 5 BASIC43.59■■■■■ 4.57
COL17A1Q9UMD9 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC43.58■■■■■ 4.57
COL17A1Q9UMD9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC43.58■■■■■ 4.57
COL17A1Q9UMD9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC43.53■■■■■ 4.56
COL17A1Q9UMD9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC43.52■■■■■ 4.56
COL17A1Q9UMD9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC43.51■■■■■ 4.56
COL17A1Q9UMD9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC43.51■■■■■ 4.56
COL17A1Q9UMD9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC43.51■■■■■ 4.56
COL17A1Q9UMD9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC43.51■■■■■ 4.56
COL17A1Q9UMD9 CHML-205ENST00000638160 705 ntTSL 3 BASIC43.49■■■■■ 4.55
COL17A1Q9UMD9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC43.47■■■■■ 4.55
COL17A1Q9UMD9 MIR762-201ENST00000390236 83 ntBASIC43.47■■■■■ 4.55
COL17A1Q9UMD9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC43.47■■■■■ 4.55
COL17A1Q9UMD9 MIR4449-201ENST00000578365 66 ntBASIC43.45■■■■■ 4.55
COL17A1Q9UMD9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC43.43■■■■■ 4.54
COL17A1Q9UMD9 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC43.41■■■■■ 4.54
COL17A1Q9UMD9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC43.41■■■■■ 4.54
COL17A1Q9UMD9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC43.41■■■■■ 4.54
COL17A1Q9UMD9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC43.39■■■■■ 4.54
COL17A1Q9UMD9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC43.38■■■■■ 4.54
COL17A1Q9UMD9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC43.38■■■■■ 4.53
COL17A1Q9UMD9 AC005559.1-201ENST00000589661 871 ntBASIC43.38■■■■■ 4.53
COL17A1Q9UMD9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC43.36■■■■■ 4.53
COL17A1Q9UMD9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC43.35■■■■■ 4.53
COL17A1Q9UMD9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC43.34■■■■■ 4.53
COL17A1Q9UMD9 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC43.34■■■■■ 4.53
COL17A1Q9UMD9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC43.33■■■■■ 4.53
COL17A1Q9UMD9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC43.32■■■■■ 4.53
COL17A1Q9UMD9 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC43.31■■■■■ 4.52
COL17A1Q9UMD9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC43.29■■■■■ 4.52
COL17A1Q9UMD9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC43.29■■■■■ 4.52
COL17A1Q9UMD9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC43.29■■■■■ 4.52
COL17A1Q9UMD9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC43.28■■■■■ 4.52
COL17A1Q9UMD9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC43.26■■■■■ 4.52
COL17A1Q9UMD9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC43.26■■■■■ 4.52
COL17A1Q9UMD9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC43.25■■■■■ 4.51
COL17A1Q9UMD9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC43.21■■■■■ 4.51
COL17A1Q9UMD9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC43.2■■■■■ 4.51
COL17A1Q9UMD9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC43.2■■■■■ 4.51
COL17A1Q9UMD9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC43.19■■■■■ 4.5
COL17A1Q9UMD9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC43.17■■■■■ 4.5
COL17A1Q9UMD9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC43.15■■■■■ 4.5
COL17A1Q9UMD9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC43.14■■■■■ 4.5
COL17A1Q9UMD9 HSD17B1P1-201ENST00000590052 955 ntBASIC43.14■■■■■ 4.5
COL17A1Q9UMD9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC43.13■■■■■ 4.49
COL17A1Q9UMD9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC43.12■■■■■ 4.49
COL17A1Q9UMD9 MIR639-201ENST00000384974 98 ntBASIC43.12■■■■■ 4.49
COL17A1Q9UMD9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC43.09■■■■■ 4.49
COL17A1Q9UMD9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC43.09■■■■■ 4.49
COL17A1Q9UMD9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC43.06■■■■■ 4.48
COL17A1Q9UMD9 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC43.05■■■■■ 4.48
COL17A1Q9UMD9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC43.05■■■■■ 4.48
COL17A1Q9UMD9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC43■■■■■ 4.47
COL17A1Q9UMD9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC42.99■■■■■ 4.47
COL17A1Q9UMD9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC42.99■■■■■ 4.47
COL17A1Q9UMD9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC42.98■■■■■ 4.47
COL17A1Q9UMD9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC42.96■■■■■ 4.47
COL17A1Q9UMD9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC42.96■■■■■ 4.47
COL17A1Q9UMD9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC42.95■■■■■ 4.47
COL17A1Q9UMD9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC42.95■■■■■ 4.47
COL17A1Q9UMD9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC42.94■■■■■ 4.46
COL17A1Q9UMD9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC42.91■■■■■ 4.46
COL17A1Q9UMD9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC42.9■■■■■ 4.46
COL17A1Q9UMD9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC42.89■■■■■ 4.46
COL17A1Q9UMD9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC42.85■■■■■ 4.45
COL17A1Q9UMD9 ILK-212ENST00000532063 1617 ntTSL 2 BASIC42.85■■■■■ 4.45
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms