Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC46.17■■■■■ 4.98
COL17A1Q9UMD9 RPS2P35-201ENST00000443417 897 ntBASIC46.16■■■■■ 4.98
COL17A1Q9UMD9 RARRES2P7-201ENST00000567349 469 ntBASIC46.07■■■■■ 4.97
COL17A1Q9UMD9 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC46.06■■■■■ 4.96
COL17A1Q9UMD9 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC46.06■■■■■ 4.96
COL17A1Q9UMD9 AC136428.2-201ENST00000563187 214 ntBASIC46■■■■■ 4.95
COL17A1Q9UMD9 SUZ12P1-203ENST00000578195 985 ntBASIC46■■■■■ 4.95
COL17A1Q9UMD9 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC45.98■■■■■ 4.95
COL17A1Q9UMD9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC45.94■■■■■ 4.94
COL17A1Q9UMD9 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC45.93■■■■■ 4.94
COL17A1Q9UMD9 AC097358.2-201ENST00000607541 1159 ntBASIC45.9■■■■■ 4.94
COL17A1Q9UMD9 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC45.87■■■■■ 4.93
COL17A1Q9UMD9 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC45.8■■■■■ 4.92
COL17A1Q9UMD9 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC45.79■■■■■ 4.92
COL17A1Q9UMD9 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC45.74■■■■■ 4.91
COL17A1Q9UMD9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC45.64■■■■■ 4.9
COL17A1Q9UMD9 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC45.58■■■■■ 4.89
COL17A1Q9UMD9 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC45.58■■■■■ 4.89
COL17A1Q9UMD9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC45.57■■■■■ 4.88
COL17A1Q9UMD9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC45.56■■■■■ 4.88
COL17A1Q9UMD9 SETD8P1-201ENST00000623146 1180 ntBASIC45.55■■■■■ 4.88
COL17A1Q9UMD9 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC45.5■■■■■ 4.87
COL17A1Q9UMD9 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC45.47■■■■■ 4.87
COL17A1Q9UMD9 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC45.46■■■■■ 4.87
COL17A1Q9UMD9 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC45.44■■■■■ 4.87
COL17A1Q9UMD9 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC45.44■■■■■ 4.87
COL17A1Q9UMD9 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC45.43■■■■■ 4.86
COL17A1Q9UMD9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC45.41■■■■■ 4.86
COL17A1Q9UMD9 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC45.39■■■■■ 4.86
COL17A1Q9UMD9 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC45.32■■■■■ 4.85
COL17A1Q9UMD9 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC45.29■■■■■ 4.84
COL17A1Q9UMD9 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC45.24■■■■■ 4.83
COL17A1Q9UMD9 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC45.22■■■■■ 4.83
COL17A1Q9UMD9 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC45.2■■■■■ 4.83
COL17A1Q9UMD9 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC45.18■■■■■ 4.82
COL17A1Q9UMD9 AL162393.1-201ENST00000437852 946 ntBASIC45.17■■■■■ 4.82
COL17A1Q9UMD9 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC45.17■■■■■ 4.82
COL17A1Q9UMD9 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC45.15■■■■■ 4.82
COL17A1Q9UMD9 NRG1-221ENST00000614767 762 ntTSL 5 BASIC45.13■■■■■ 4.82
COL17A1Q9UMD9 KLF16-203ENST00000592313 508 ntTSL 3 BASIC45.11■■■■■ 4.81
COL17A1Q9UMD9 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC45.11■■■■■ 4.81
COL17A1Q9UMD9 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC45.1■■■■■ 4.81
COL17A1Q9UMD9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC45.08■■■■■ 4.81
COL17A1Q9UMD9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC45.07■■■■■ 4.81
COL17A1Q9UMD9 EBPL-203ENST00000378270 579 ntTSL 2 BASIC45.06■■■■■ 4.8
COL17A1Q9UMD9 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC45.04■■■■■ 4.8
COL17A1Q9UMD9 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC45.02■■■■■ 4.8
COL17A1Q9UMD9 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC44.97■■■■■ 4.79
COL17A1Q9UMD9 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC44.96■■■■■ 4.79
COL17A1Q9UMD9 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC44.96■■■■■ 4.79
COL17A1Q9UMD9 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC44.94■■■■■ 4.79
COL17A1Q9UMD9 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC44.93■■■■■ 4.78
COL17A1Q9UMD9 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC44.91■■■■■ 4.78
COL17A1Q9UMD9 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC44.89■■■■■ 4.78
COL17A1Q9UMD9 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC44.87■■■■■ 4.77
COL17A1Q9UMD9 CAHM-201ENST00000604200 896 ntBASIC44.85■■■■■ 4.77
COL17A1Q9UMD9 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC44.81■■■■■ 4.76
COL17A1Q9UMD9 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC44.79■■■■■ 4.76
COL17A1Q9UMD9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC44.78■■■■■ 4.76
COL17A1Q9UMD9 MIR7108-201ENST00000614319 87 ntBASIC44.76■■■■■ 4.76
COL17A1Q9UMD9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC44.75■■■■■ 4.75
COL17A1Q9UMD9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC44.73■■■■■ 4.75
COL17A1Q9UMD9 AP006261.1-201ENST00000584783 668 ntBASIC44.72■■■■■ 4.75
COL17A1Q9UMD9 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC44.69■■■■■ 4.74
COL17A1Q9UMD9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC44.66■■■■■ 4.74
COL17A1Q9UMD9 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC44.63■■■■■ 4.74
COL17A1Q9UMD9 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC44.63■■■■■ 4.73
COL17A1Q9UMD9 ABHD17AP4-201ENST00000411545 909 ntBASIC44.6■■■■■ 4.73
COL17A1Q9UMD9 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC44.6■■■■■ 4.73
COL17A1Q9UMD9 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC44.6■■■■■ 4.73
COL17A1Q9UMD9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC44.55■■■■■ 4.72
COL17A1Q9UMD9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC44.54■■■■■ 4.72
COL17A1Q9UMD9 PVT1-219ENST00000523427 938 ntTSL 3 BASIC44.52■■■■■ 4.72
COL17A1Q9UMD9 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC44.5■■■■■ 4.71
COL17A1Q9UMD9 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC44.48■■■■■ 4.71
COL17A1Q9UMD9 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC44.48■■■■■ 4.71
COL17A1Q9UMD9 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC44.47■■■■■ 4.71
COL17A1Q9UMD9 MBP-237ENST00000579129 1052 ntTSL 5 BASIC44.46■■■■■ 4.71
COL17A1Q9UMD9 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC44.45■■■■■ 4.71
COL17A1Q9UMD9 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC44.43■■■■■ 4.7
COL17A1Q9UMD9 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC44.43■■■■■ 4.7
COL17A1Q9UMD9 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC44.41■■■■■ 4.7
COL17A1Q9UMD9 AL391121.1-201ENST00000607967 1349 ntBASIC44.41■■■■■ 4.7
COL17A1Q9UMD9 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC44.4■■■■■ 4.7
COL17A1Q9UMD9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC44.39■■■■■ 4.7
COL17A1Q9UMD9 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC44.39■■■■■ 4.7
COL17A1Q9UMD9 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC44.38■■■■■ 4.69
COL17A1Q9UMD9 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC44.37■■■■■ 4.69
COL17A1Q9UMD9 HLA-V-202ENST00000446817 847 ntBASIC44.36■■■■■ 4.69
COL17A1Q9UMD9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC44.33■■■■■ 4.69
COL17A1Q9UMD9 HNRNPLP2-201ENST00000568980 1570 ntBASIC44.32■■■■■ 4.69
COL17A1Q9UMD9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC44.32■■■■■ 4.69
COL17A1Q9UMD9 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC44.26■■■■■ 4.68
COL17A1Q9UMD9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC44.23■■■■■ 4.67
COL17A1Q9UMD9 MLEC-202ENST00000412616 841 ntTSL 3 BASIC44.21■■■■■ 4.67
COL17A1Q9UMD9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC44.17■■■■■ 4.66
COL17A1Q9UMD9 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC44.16■■■■■ 4.66
COL17A1Q9UMD9 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC44.15■■■■■ 4.66
COL17A1Q9UMD9 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC44.1■■■■■ 4.65
COL17A1Q9UMD9 AC087741.3-201ENST00000624270 1347 ntBASIC44.09■■■■■ 4.65
Retrieved 100 of 98,524 protein–RNA pairs in 14.3 ms