Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 AC087741.3-201ENST00000624270 1347 ntBASIC31.18■■■□□ 2.58
LRCH3Q96II8 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
LRCH3Q96II8 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC31.17■■■□□ 2.58
LRCH3Q96II8 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.15■■■□□ 2.58
LRCH3Q96II8 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.13■■■□□ 2.57
LRCH3Q96II8 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.13■■■□□ 2.57
LRCH3Q96II8 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.13■■■□□ 2.57
LRCH3Q96II8 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.13■■■□□ 2.57
LRCH3Q96II8 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.12■■■□□ 2.57
LRCH3Q96II8 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC31.1■■■□□ 2.57
LRCH3Q96II8 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.1■■■□□ 2.57
LRCH3Q96II8 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
LRCH3Q96II8 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.06■■■□□ 2.56
LRCH3Q96II8 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
LRCH3Q96II8 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.05■■■□□ 2.56
LRCH3Q96II8 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.02■■■□□ 2.56
LRCH3Q96II8 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.02■■■□□ 2.56
LRCH3Q96II8 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
LRCH3Q96II8 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
LRCH3Q96II8 DUX4L28-201ENST00000623687 678 ntBASIC31.02■■■□□ 2.56
LRCH3Q96II8 ZNRF2P2-203ENST00000454624 420 ntBASIC31.01■■■□□ 2.55
LRCH3Q96II8 AC044849.2-201ENST00000606596 710 ntBASIC31■■■□□ 2.55
LRCH3Q96II8 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
LRCH3Q96II8 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
LRCH3Q96II8 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC30.95■■■□□ 2.55
LRCH3Q96II8 RPS2-202ENST00000526522 924 ntTSL 2 BASIC30.94■■■□□ 2.54
LRCH3Q96II8 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC30.92■■■□□ 2.54
LRCH3Q96II8 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC30.92■■■□□ 2.54
LRCH3Q96II8 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.91■■■□□ 2.54
LRCH3Q96II8 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.89■■■□□ 2.54
LRCH3Q96II8 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
LRCH3Q96II8 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC30.87■■■□□ 2.53
LRCH3Q96II8 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
LRCH3Q96II8 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
LRCH3Q96II8 AL133380.1-201ENST00000506013 324 ntBASIC30.86■■■□□ 2.53
LRCH3Q96II8 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
LRCH3Q96II8 MIR4449-201ENST00000578365 66 ntBASIC30.85■■■□□ 2.53
LRCH3Q96II8 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
LRCH3Q96II8 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
LRCH3Q96II8 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
LRCH3Q96II8 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.76■■■□□ 2.51
LRCH3Q96II8 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.73■■■□□ 2.51
LRCH3Q96II8 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
LRCH3Q96II8 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.72■■■□□ 2.51
LRCH3Q96II8 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
LRCH3Q96II8 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.7■■■□□ 2.51
LRCH3Q96II8 HSD17B1P1-201ENST00000590052 955 ntBASIC30.7■■■□□ 2.51
LRCH3Q96II8 MIR762-201ENST00000390236 83 ntBASIC30.69■■■□□ 2.5
LRCH3Q96II8 AC005559.1-201ENST00000589661 871 ntBASIC30.68■■■□□ 2.5
LRCH3Q96II8 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC30.67■■■□□ 2.5
LRCH3Q96II8 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
LRCH3Q96II8 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.67■■■□□ 2.5
LRCH3Q96II8 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC30.66■■■□□ 2.5
LRCH3Q96II8 BRD4-212ENST00000630599 726 ntTSL 2 BASIC30.66■■■□□ 2.5
LRCH3Q96II8 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
LRCH3Q96II8 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
LRCH3Q96II8 HGH1-207ENST00000628266 258 ntTSL 5 BASIC30.65■■■□□ 2.5
LRCH3Q96II8 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
LRCH3Q96II8 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
LRCH3Q96II8 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
LRCH3Q96II8 MIR639-201ENST00000384974 98 ntBASIC30.61■■■□□ 2.49
LRCH3Q96II8 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
LRCH3Q96II8 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
LRCH3Q96II8 MVK-208ENST00000539696 608 ntTSL 5 BASIC30.6■■■□□ 2.49
LRCH3Q96II8 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.59■■■□□ 2.49
LRCH3Q96II8 AC145285.7-201ENST00000614819 1539 ntBASIC30.57■■■□□ 2.49
LRCH3Q96II8 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
LRCH3Q96II8 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.53■■■□□ 2.48
LRCH3Q96II8 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC30.52■■■□□ 2.48
LRCH3Q96II8 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
LRCH3Q96II8 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
LRCH3Q96II8 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
LRCH3Q96II8 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC30.51■■■□□ 2.47
LRCH3Q96II8 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC30.5■■■□□ 2.47
LRCH3Q96II8 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC30.49■■■□□ 2.47
LRCH3Q96II8 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.49■■■□□ 2.47
LRCH3Q96II8 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.48■■■□□ 2.47
LRCH3Q96II8 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.48■■■□□ 2.47
LRCH3Q96II8 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC30.48■■■□□ 2.47
LRCH3Q96II8 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC30.46■■■□□ 2.47
LRCH3Q96II8 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
LRCH3Q96II8 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
LRCH3Q96II8 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC30.43■■■□□ 2.46
LRCH3Q96II8 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.42■■■□□ 2.46
LRCH3Q96II8 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.41■■■□□ 2.46
LRCH3Q96II8 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
LRCH3Q96II8 MACF1-219ENST00000484793 834 ntTSL 2 BASIC30.38■■■□□ 2.45
LRCH3Q96II8 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.38■■■□□ 2.45
LRCH3Q96II8 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC30.34■■■□□ 2.45
LRCH3Q96II8 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
LRCH3Q96II8 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
LRCH3Q96II8 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.45
LRCH3Q96II8 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC30.32■■■□□ 2.44
LRCH3Q96II8 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
LRCH3Q96II8 DUX4L29-201ENST00000425409 679 ntBASIC30.3■■■□□ 2.44
LRCH3Q96II8 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC30.3■■■□□ 2.44
LRCH3Q96II8 AC016575.1-201ENST00000607026 382 ntBASIC30.29■■■□□ 2.44
LRCH3Q96II8 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC30.29■■■□□ 2.44
LRCH3Q96II8 ABHD17AP3-201ENST00000503096 1137 ntBASIC30.28■■■□□ 2.44
LRCH3Q96II8 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms