Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CCHCR1Q8TD31 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CCHCR1Q8TD31 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC28.82■■■□□ 2.2
CCHCR1Q8TD31 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC28.82■■■□□ 2.2
CCHCR1Q8TD31 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC28.82■■■□□ 2.2
CCHCR1Q8TD31 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCHCR1Q8TD31 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCHCR1Q8TD31 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCHCR1Q8TD31 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
CCHCR1Q8TD31 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC28.78■■■□□ 2.2
CCHCR1Q8TD31 AP002365.1-201ENST00000603448 772 ntBASIC28.78■■■□□ 2.2
CCHCR1Q8TD31 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC28.77■■■□□ 2.2
CCHCR1Q8TD31 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CCHCR1Q8TD31 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
CCHCR1Q8TD31 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCHCR1Q8TD31 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCHCR1Q8TD31 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC28.71■■■□□ 2.19
CCHCR1Q8TD31 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
CCHCR1Q8TD31 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCHCR1Q8TD31 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCHCR1Q8TD31 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC28.68■■■□□ 2.18
CCHCR1Q8TD31 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
CCHCR1Q8TD31 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
CCHCR1Q8TD31 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CCHCR1Q8TD31 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
CCHCR1Q8TD31 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC28.64■■■□□ 2.18
CCHCR1Q8TD31 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
CCHCR1Q8TD31 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC28.64■■■□□ 2.17
CCHCR1Q8TD31 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCHCR1Q8TD31 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC28.63■■■□□ 2.17
CCHCR1Q8TD31 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC28.62■■■□□ 2.17
CCHCR1Q8TD31 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CCHCR1Q8TD31 DYNLL1-208ENST00000550178 581 ntBASIC28.62■■■□□ 2.17
CCHCR1Q8TD31 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC28.61■■■□□ 2.17
CCHCR1Q8TD31 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCHCR1Q8TD31 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC28.6■■■□□ 2.17
CCHCR1Q8TD31 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC28.59■■■□□ 2.17
CCHCR1Q8TD31 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC28.58■■■□□ 2.17
CCHCR1Q8TD31 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC28.57■■■□□ 2.16
CCHCR1Q8TD31 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC28.57■■■□□ 2.16
CCHCR1Q8TD31 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CCHCR1Q8TD31 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
CCHCR1Q8TD31 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CCHCR1Q8TD31 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCHCR1Q8TD31 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCHCR1Q8TD31 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
CCHCR1Q8TD31 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CCHCR1Q8TD31 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC28.52■■■□□ 2.16
CCHCR1Q8TD31 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC28.52■■■□□ 2.16
CCHCR1Q8TD31 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC28.51■■■□□ 2.15
CCHCR1Q8TD31 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC28.51■■■□□ 2.15
CCHCR1Q8TD31 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
CCHCR1Q8TD31 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC28.49■■■□□ 2.15
CCHCR1Q8TD31 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC28.49■■■□□ 2.15
CCHCR1Q8TD31 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
CCHCR1Q8TD31 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
CCHCR1Q8TD31 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC28.48■■■□□ 2.15
CCHCR1Q8TD31 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
CCHCR1Q8TD31 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
CCHCR1Q8TD31 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC28.45■■■□□ 2.14
CCHCR1Q8TD31 AC120057.4-201ENST00000624722 1615 ntBASIC28.44■■■□□ 2.14
CCHCR1Q8TD31 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC28.44■■■□□ 2.14
CCHCR1Q8TD31 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
CCHCR1Q8TD31 AL031258.1-201ENST00000623562 325 ntBASIC28.41■■■□□ 2.14
CCHCR1Q8TD31 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
CCHCR1Q8TD31 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC28.4■■■□□ 2.14
CCHCR1Q8TD31 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC28.39■■■□□ 2.14
CCHCR1Q8TD31 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC28.38■■■□□ 2.13
CCHCR1Q8TD31 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.36■■■□□ 2.13
CCHCR1Q8TD31 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC28.35■■■□□ 2.13
CCHCR1Q8TD31 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC28.35■■■□□ 2.13
CCHCR1Q8TD31 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CCHCR1Q8TD31 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCHCR1Q8TD31 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCHCR1Q8TD31 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
CCHCR1Q8TD31 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC28.34■■■□□ 2.13
CCHCR1Q8TD31 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.12
CCHCR1Q8TD31 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
CCHCR1Q8TD31 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC28.31■■■□□ 2.12
CCHCR1Q8TD31 AL161658.1-201ENST00000623641 1967 ntBASIC28.31■■■□□ 2.12
CCHCR1Q8TD31 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCHCR1Q8TD31 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
CCHCR1Q8TD31 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
CCHCR1Q8TD31 EBPL-203ENST00000378270 579 ntTSL 2 BASIC28.27■■■□□ 2.12
CCHCR1Q8TD31 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
CCHCR1Q8TD31 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
CCHCR1Q8TD31 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
CCHCR1Q8TD31 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
CCHCR1Q8TD31 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
CCHCR1Q8TD31 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC28.22■■■□□ 2.11
CCHCR1Q8TD31 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
CCHCR1Q8TD31 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCHCR1Q8TD31 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
CCHCR1Q8TD31 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC28.2■■■□□ 2.11
CCHCR1Q8TD31 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.2■■■□□ 2.1
CCHCR1Q8TD31 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
CCHCR1Q8TD31 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
CCHCR1Q8TD31 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
CCHCR1Q8TD31 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
CCHCR1Q8TD31 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms