Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
ALMS1Q8TCU4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.53■□□□□ 0.72
ALMS1Q8TCU4 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
ALMS1Q8TCU4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC19.52■□□□□ 0.72
ALMS1Q8TCU4 AL133380.1-201ENST00000506013 324 ntBASIC19.52■□□□□ 0.71
ALMS1Q8TCU4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC19.51■□□□□ 0.71
ALMS1Q8TCU4 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC19.51■□□□□ 0.71
ALMS1Q8TCU4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
ALMS1Q8TCU4 AC087741.3-201ENST00000624270 1347 ntBASIC19.5■□□□□ 0.71
ALMS1Q8TCU4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.5■□□□□ 0.71
ALMS1Q8TCU4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
ALMS1Q8TCU4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC19.46■□□□□ 0.71
ALMS1Q8TCU4 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC19.46■□□□□ 0.71
ALMS1Q8TCU4 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC19.46■□□□□ 0.71
ALMS1Q8TCU4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC19.46■□□□□ 0.71
ALMS1Q8TCU4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC19.45■□□□□ 0.7
ALMS1Q8TCU4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
ALMS1Q8TCU4 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
ALMS1Q8TCU4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC19.43■□□□□ 0.7
ALMS1Q8TCU4 MIR762-201ENST00000390236 83 ntBASIC19.43■□□□□ 0.7
ALMS1Q8TCU4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
ALMS1Q8TCU4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC19.42■□□□□ 0.7
ALMS1Q8TCU4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
ALMS1Q8TCU4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC19.41■□□□□ 0.7
ALMS1Q8TCU4 MVK-208ENST00000539696 608 ntTSL 5 BASIC19.41■□□□□ 0.7
ALMS1Q8TCU4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
ALMS1Q8TCU4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
ALMS1Q8TCU4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.39■□□□□ 0.69
ALMS1Q8TCU4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.39■□□□□ 0.69
ALMS1Q8TCU4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ALMS1Q8TCU4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
ALMS1Q8TCU4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC19.38■□□□□ 0.69
ALMS1Q8TCU4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
ALMS1Q8TCU4 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
ALMS1Q8TCU4 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.37■□□□□ 0.69
ALMS1Q8TCU4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
ALMS1Q8TCU4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC19.36■□□□□ 0.69
ALMS1Q8TCU4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
ALMS1Q8TCU4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
ALMS1Q8TCU4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
ALMS1Q8TCU4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
ALMS1Q8TCU4 AC044849.2-201ENST00000606596 710 ntBASIC19.34■□□□□ 0.69
ALMS1Q8TCU4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC19.32■□□□□ 0.68
ALMS1Q8TCU4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC19.32■□□□□ 0.68
ALMS1Q8TCU4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC19.32■□□□□ 0.68
ALMS1Q8TCU4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
ALMS1Q8TCU4 AC005559.1-201ENST00000589661 871 ntBASIC19.31■□□□□ 0.68
ALMS1Q8TCU4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ALMS1Q8TCU4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
ALMS1Q8TCU4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC19.29■□□□□ 0.68
ALMS1Q8TCU4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
ALMS1Q8TCU4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC19.27■□□□□ 0.68
ALMS1Q8TCU4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC19.27■□□□□ 0.68
ALMS1Q8TCU4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC19.27■□□□□ 0.67
ALMS1Q8TCU4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC19.26■□□□□ 0.67
ALMS1Q8TCU4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC19.25■□□□□ 0.67
ALMS1Q8TCU4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ALMS1Q8TCU4 CHML-205ENST00000638160 705 ntTSL 3 BASIC19.24■□□□□ 0.67
ALMS1Q8TCU4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC19.24■□□□□ 0.67
ALMS1Q8TCU4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ALMS1Q8TCU4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC19.23■□□□□ 0.67
ALMS1Q8TCU4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
ALMS1Q8TCU4 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
ALMS1Q8TCU4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ALMS1Q8TCU4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.2■□□□□ 0.66
ALMS1Q8TCU4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ALMS1Q8TCU4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ALMS1Q8TCU4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ALMS1Q8TCU4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ALMS1Q8TCU4 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ALMS1Q8TCU4 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ALMS1Q8TCU4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.66
ALMS1Q8TCU4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.14■□□□□ 0.65
ALMS1Q8TCU4 HSD17B1P1-201ENST00000590052 955 ntBASIC19.13■□□□□ 0.65
ALMS1Q8TCU4 MIR4449-201ENST00000578365 66 ntBASIC19.13■□□□□ 0.65
ALMS1Q8TCU4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
ALMS1Q8TCU4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
ALMS1Q8TCU4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
ALMS1Q8TCU4 ZNRF2P2-203ENST00000454624 420 ntBASIC19.1■□□□□ 0.65
ALMS1Q8TCU4 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
ALMS1Q8TCU4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC19.09■□□□□ 0.65
ALMS1Q8TCU4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
ALMS1Q8TCU4 MACF1-219ENST00000484793 834 ntTSL 2 BASIC19.08■□□□□ 0.65
ALMS1Q8TCU4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
ALMS1Q8TCU4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
ALMS1Q8TCU4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC19.06■□□□□ 0.64
ALMS1Q8TCU4 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ALMS1Q8TCU4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ALMS1Q8TCU4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC19.05■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 13.4 ms