Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC27.19■■□□□ 1.94
PTCHD3Q3KNS1 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PTCHD3Q3KNS1 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PTCHD3Q3KNS1 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
PTCHD3Q3KNS1 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
PTCHD3Q3KNS1 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
PTCHD3Q3KNS1 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
PTCHD3Q3KNS1 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
PTCHD3Q3KNS1 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC27.11■■□□□ 1.93
PTCHD3Q3KNS1 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC27.11■■□□□ 1.93
PTCHD3Q3KNS1 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC27.09■■□□□ 1.93
PTCHD3Q3KNS1 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC27.09■■□□□ 1.93
PTCHD3Q3KNS1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC27.09■■□□□ 1.93
PTCHD3Q3KNS1 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC27.08■■□□□ 1.92
PTCHD3Q3KNS1 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.07■■□□□ 1.92
PTCHD3Q3KNS1 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.06■■□□□ 1.92
PTCHD3Q3KNS1 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC27.06■■□□□ 1.92
PTCHD3Q3KNS1 EBPL-203ENST00000378270 579 ntTSL 2 BASIC27.05■■□□□ 1.92
PTCHD3Q3KNS1 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC27.05■■□□□ 1.92
PTCHD3Q3KNS1 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PTCHD3Q3KNS1 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC27.04■■□□□ 1.92
PTCHD3Q3KNS1 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC27.04■■□□□ 1.92
PTCHD3Q3KNS1 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC27■■□□□ 1.91
PTCHD3Q3KNS1 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
PTCHD3Q3KNS1 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.98■■□□□ 1.91
PTCHD3Q3KNS1 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
PTCHD3Q3KNS1 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
PTCHD3Q3KNS1 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
PTCHD3Q3KNS1 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
PTCHD3Q3KNS1 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC26.96■■□□□ 1.91
PTCHD3Q3KNS1 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
PTCHD3Q3KNS1 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
PTCHD3Q3KNS1 RARRES2P7-201ENST00000567349 469 ntBASIC26.93■■□□□ 1.9
PTCHD3Q3KNS1 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
PTCHD3Q3KNS1 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.92■■□□□ 1.9
PTCHD3Q3KNS1 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.92■■□□□ 1.9
PTCHD3Q3KNS1 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
PTCHD3Q3KNS1 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.89■■□□□ 1.9
PTCHD3Q3KNS1 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
PTCHD3Q3KNS1 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
PTCHD3Q3KNS1 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC26.88■■□□□ 1.89
PTCHD3Q3KNS1 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC26.88■■□□□ 1.89
PTCHD3Q3KNS1 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
PTCHD3Q3KNS1 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
PTCHD3Q3KNS1 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.86■■□□□ 1.89
PTCHD3Q3KNS1 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
PTCHD3Q3KNS1 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
PTCHD3Q3KNS1 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
PTCHD3Q3KNS1 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.82■■□□□ 1.88
PTCHD3Q3KNS1 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
PTCHD3Q3KNS1 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
PTCHD3Q3KNS1 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC26.8■■□□□ 1.88
PTCHD3Q3KNS1 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC26.8■■□□□ 1.88
PTCHD3Q3KNS1 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 KLF16-203ENST00000592313 508 ntTSL 3 BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
PTCHD3Q3KNS1 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTCHD3Q3KNS1 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
PTCHD3Q3KNS1 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
PTCHD3Q3KNS1 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC26.77■■□□□ 1.88
PTCHD3Q3KNS1 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
PTCHD3Q3KNS1 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.75■■□□□ 1.87
PTCHD3Q3KNS1 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.74■■□□□ 1.87
PTCHD3Q3KNS1 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD3Q3KNS1 AC120057.4-201ENST00000624722 1615 ntBASIC26.74■■□□□ 1.87
PTCHD3Q3KNS1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD3Q3KNS1 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
PTCHD3Q3KNS1 SETD8P1-201ENST00000623146 1180 ntBASIC26.73■■□□□ 1.87
PTCHD3Q3KNS1 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCHD3Q3KNS1 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
PTCHD3Q3KNS1 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
PTCHD3Q3KNS1 ST7-205ENST00000393446 2114 ntTSL 5 BASIC26.71■■□□□ 1.87
PTCHD3Q3KNS1 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
PTCHD3Q3KNS1 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC26.7■■□□□ 1.87
PTCHD3Q3KNS1 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC26.7■■□□□ 1.86
PTCHD3Q3KNS1 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC26.69■■□□□ 1.86
PTCHD3Q3KNS1 AC097358.2-201ENST00000607541 1159 ntBASIC26.68■■□□□ 1.86
PTCHD3Q3KNS1 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCHD3Q3KNS1 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC26.67■■□□□ 1.86
PTCHD3Q3KNS1 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC26.67■■□□□ 1.86
PTCHD3Q3KNS1 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC26.67■■□□□ 1.86
PTCHD3Q3KNS1 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC26.66■■□□□ 1.86
PTCHD3Q3KNS1 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC26.66■■□□□ 1.86
PTCHD3Q3KNS1 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC26.65■■□□□ 1.86
PTCHD3Q3KNS1 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
PTCHD3Q3KNS1 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PTCHD3Q3KNS1 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
PTCHD3Q3KNS1 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCHD3Q3KNS1 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
PTCHD3Q3KNS1 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCHD3Q3KNS1 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC26.62■■□□□ 1.85
PTCHD3Q3KNS1 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Retrieved 100 of 98,524 protein–RNA pairs in 8.3 ms