Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
HIST1H1AQ02539 ZNRF2P1-201ENST00000441407 443 ntBASIC20.99■□□□□ 0.95
HIST1H1AQ02539 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIST1H1AQ02539 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
HIST1H1AQ02539 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20.98■□□□□ 0.95
HIST1H1AQ02539 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC20.98■□□□□ 0.95
HIST1H1AQ02539 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC20.98■□□□□ 0.95
HIST1H1AQ02539 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HIST1H1AQ02539 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HIST1H1AQ02539 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HIST1H1AQ02539 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HIST1H1AQ02539 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HIST1H1AQ02539 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HIST1H1AQ02539 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HIST1H1AQ02539 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HIST1H1AQ02539 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
HIST1H1AQ02539 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC20.92■□□□□ 0.94
HIST1H1AQ02539 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HIST1H1AQ02539 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
HIST1H1AQ02539 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC20.91■□□□□ 0.94
HIST1H1AQ02539 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC20.91■□□□□ 0.94
HIST1H1AQ02539 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC20.91■□□□□ 0.94
HIST1H1AQ02539 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HIST1H1AQ02539 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
HIST1H1AQ02539 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.89■□□□□ 0.94
HIST1H1AQ02539 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.89■□□□□ 0.93
HIST1H1AQ02539 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC20.87■□□□□ 0.93
HIST1H1AQ02539 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HIST1H1AQ02539 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC20.86■□□□□ 0.93
HIST1H1AQ02539 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.86■□□□□ 0.93
HIST1H1AQ02539 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HIST1H1AQ02539 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HIST1H1AQ02539 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC20.85■□□□□ 0.93
HIST1H1AQ02539 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIST1H1AQ02539 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
HIST1H1AQ02539 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
HIST1H1AQ02539 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
HIST1H1AQ02539 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
HIST1H1AQ02539 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
HIST1H1AQ02539 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIST1H1AQ02539 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIST1H1AQ02539 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HIST1H1AQ02539 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
HIST1H1AQ02539 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
HIST1H1AQ02539 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HIST1H1AQ02539 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
HIST1H1AQ02539 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
HIST1H1AQ02539 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HIST1H1AQ02539 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HIST1H1AQ02539 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.76■□□□□ 0.91
HIST1H1AQ02539 MVK-208ENST00000539696 608 ntTSL 5 BASIC20.76■□□□□ 0.91
HIST1H1AQ02539 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HIST1H1AQ02539 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HIST1H1AQ02539 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC20.75■□□□□ 0.91
HIST1H1AQ02539 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HIST1H1AQ02539 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HIST1H1AQ02539 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
HIST1H1AQ02539 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HIST1H1AQ02539 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
HIST1H1AQ02539 AC139426.1-201ENST00000568218 2529 ntBASIC20.72■□□□□ 0.91
HIST1H1AQ02539 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC20.71■□□□□ 0.91
HIST1H1AQ02539 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HIST1H1AQ02539 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
HIST1H1AQ02539 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC20.7■□□□□ 0.9
HIST1H1AQ02539 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC20.7■□□□□ 0.9
HIST1H1AQ02539 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HIST1H1AQ02539 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HIST1H1AQ02539 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HIST1H1AQ02539 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.67■□□□□ 0.9
HIST1H1AQ02539 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIST1H1AQ02539 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC20.66■□□□□ 0.9
HIST1H1AQ02539 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HIST1H1AQ02539 DYNLL1-208ENST00000550178 581 ntBASIC20.66■□□□□ 0.9
HIST1H1AQ02539 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HIST1H1AQ02539 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HIST1H1AQ02539 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIST1H1AQ02539 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
HIST1H1AQ02539 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HIST1H1AQ02539 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIST1H1AQ02539 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HIST1H1AQ02539 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HIST1H1AQ02539 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HIST1H1AQ02539 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC20.6■□□□□ 0.89
HIST1H1AQ02539 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HIST1H1AQ02539 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC20.59■□□□□ 0.89
HIST1H1AQ02539 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HIST1H1AQ02539 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
HIST1H1AQ02539 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HIST1H1AQ02539 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.57■□□□□ 0.88
HIST1H1AQ02539 AC120057.4-201ENST00000624722 1615 ntBASIC20.56■□□□□ 0.88
HIST1H1AQ02539 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HIST1H1AQ02539 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HIST1H1AQ02539 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC20.55■□□□□ 0.88
HIST1H1AQ02539 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
HIST1H1AQ02539 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.55■□□□□ 0.88
HIST1H1AQ02539 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.55■□□□□ 0.88
HIST1H1AQ02539 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC20.55■□□□□ 0.88
HIST1H1AQ02539 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIST1H1AQ02539 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
HIST1H1AQ02539 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms