Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC33.14■■■□□ 2.9
SHMT1P34896 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC33.14■■■□□ 2.9
SHMT1P34896 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHMT1P34896 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC33.11■■■□□ 2.89
SHMT1P34896 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC33.1■■■□□ 2.89
SHMT1P34896 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC33.1■■■□□ 2.89
SHMT1P34896 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
SHMT1P34896 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC33.04■■■□□ 2.88
SHMT1P34896 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC33.03■■■□□ 2.88
SHMT1P34896 AL133380.1-201ENST00000506013 324 ntBASIC33.01■■■□□ 2.87
SHMT1P34896 CAHM-201ENST00000604200 896 ntBASIC33.01■■■□□ 2.87
SHMT1P34896 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC33■■■□□ 2.87
SHMT1P34896 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
SHMT1P34896 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.99■■■□□ 2.87
SHMT1P34896 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.97■■■□□ 2.87
SHMT1P34896 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.97■■■□□ 2.87
SHMT1P34896 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.96■■■□□ 2.87
SHMT1P34896 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SHMT1P34896 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC32.91■■■□□ 2.86
SHMT1P34896 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.91■■■□□ 2.86
SHMT1P34896 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHMT1P34896 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
SHMT1P34896 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.88■■■□□ 2.85
SHMT1P34896 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
SHMT1P34896 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.87■■■□□ 2.85
SHMT1P34896 AL391121.1-201ENST00000607967 1349 ntBASIC32.86■■■□□ 2.85
SHMT1P34896 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.86■■■□□ 2.85
SHMT1P34896 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
SHMT1P34896 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.83■■■□□ 2.85
SHMT1P34896 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
SHMT1P34896 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.8■■■□□ 2.84
SHMT1P34896 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.8■■■□□ 2.84
SHMT1P34896 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
SHMT1P34896 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.76■■■□□ 2.83
SHMT1P34896 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
SHMT1P34896 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.74■■■□□ 2.83
SHMT1P34896 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC32.73■■■□□ 2.83
SHMT1P34896 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
SHMT1P34896 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
SHMT1P34896 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.71■■■□□ 2.83
SHMT1P34896 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
SHMT1P34896 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
SHMT1P34896 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.69■■■□□ 2.82
SHMT1P34896 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHMT1P34896 RPS2P35-201ENST00000443417 897 ntBASIC32.66■■■□□ 2.82
SHMT1P34896 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC32.66■■■□□ 2.82
SHMT1P34896 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHMT1P34896 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC32.63■■■□□ 2.81
SHMT1P34896 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
SHMT1P34896 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.62■■■□□ 2.81
SHMT1P34896 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
SHMT1P34896 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
SHMT1P34896 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
SHMT1P34896 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC32.57■■■□□ 2.8
SHMT1P34896 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
SHMT1P34896 NRG1-221ENST00000614767 762 ntTSL 5 BASIC32.56■■■□□ 2.8
SHMT1P34896 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC32.55■■■□□ 2.8
SHMT1P34896 AL162393.1-201ENST00000437852 946 ntBASIC32.53■■■□□ 2.8
SHMT1P34896 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.53■■■□□ 2.8
SHMT1P34896 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
SHMT1P34896 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
SHMT1P34896 HNRNPLP2-201ENST00000568980 1570 ntBASIC32.49■■■□□ 2.79
SHMT1P34896 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
SHMT1P34896 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC32.48■■■□□ 2.79
SHMT1P34896 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHMT1P34896 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
SHMT1P34896 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC32.47■■■□□ 2.79
SHMT1P34896 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC32.47■■■□□ 2.79
SHMT1P34896 AP006261.1-201ENST00000584783 668 ntBASIC32.47■■■□□ 2.79
SHMT1P34896 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC32.47■■■□□ 2.79
SHMT1P34896 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC32.46■■■□□ 2.79
SHMT1P34896 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.79
SHMT1P34896 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC32.45■■■□□ 2.78
SHMT1P34896 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHMT1P34896 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
SHMT1P34896 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC32.43■■■□□ 2.78
SHMT1P34896 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.43■■■□□ 2.78
SHMT1P34896 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC32.42■■■□□ 2.78
SHMT1P34896 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.41■■■□□ 2.78
SHMT1P34896 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
SHMT1P34896 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC32.39■■■□□ 2.78
SHMT1P34896 WASH5P-204ENST00000632292 975 ntBASIC32.39■■■□□ 2.78
SHMT1P34896 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.39■■■□□ 2.78
SHMT1P34896 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC32.37■■■□□ 2.77
SHMT1P34896 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC32.36■■■□□ 2.77
SHMT1P34896 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.36■■■□□ 2.77
SHMT1P34896 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC32.36■■■□□ 2.77
SHMT1P34896 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
SHMT1P34896 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.33■■■□□ 2.77
SHMT1P34896 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SHMT1P34896 MIR762-201ENST00000390236 83 ntBASIC32.32■■■□□ 2.76
SHMT1P34896 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC32.32■■■□□ 2.76
SHMT1P34896 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHMT1P34896 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC32.3■■■□□ 2.76
SHMT1P34896 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
SHMT1P34896 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.3■■■□□ 2.76
SHMT1P34896 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.3■■■□□ 2.76
SHMT1P34896 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.3■■■□□ 2.76
SHMT1P34896 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC32.28■■■□□ 2.76
SHMT1P34896 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC32.28■■■□□ 2.76
Retrieved 100 of 98,524 protein–RNA pairs in 146.6 ms