Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
SNRNP40Q96DI7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC20.39■□□□□ 0.85
SNRNP40Q96DI7 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 CCDC92B-201ENST00000575506 885 ntBASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC20.38■□□□□ 0.85
SNRNP40Q96DI7 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 ID1-201ENST00000376105 1233 ntBASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
SNRNP40Q96DI7 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 ALDH1A3-203ENST00000557963 1670 ntBASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 NTF6G-201ENST00000591094 616 ntBASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
SNRNP40Q96DI7 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
SNRNP40Q96DI7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 DUSP8P4-201ENST00000399538 1761 ntBASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 HLA-L-211ENST00000482052 1765 ntBASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
SNRNP40Q96DI7 AC133637.1-201ENST00000624115 1537 ntBASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 KRT18P14-201ENST00000534205 1250 ntBASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
SNRNP40Q96DI7 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.33■□□□□ 0.84
SNRNP40Q96DI7 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
SNRNP40Q96DI7 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
SNRNP40Q96DI7 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
SNRNP40Q96DI7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
SNRNP40Q96DI7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 TERF1P2-201ENST00000583350 1212 ntBASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 LINC02228-203ENST00000641970 1355 ntBASIC20.31■□□□□ 0.84
SNRNP40Q96DI7 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SNRNP40Q96DI7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms