RNA–Protein interactions for RNA: ENST00000375446.4

NINJ1-201, Transcript of ninjurin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NINJ1, Length 1,281 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NINJ1-201ENST00000375446 NISCHQ9Y2I1 1504 aa53.01■■■■■ 6.08
NINJ1-201ENST00000375446 CCDC180Q9P1Z9 1646 aa47.1■■■■■ 5.13
NINJ1-201ENST00000375446 ABCC9O60706 1549 aa46.3■■■■■ 5
NINJ1-201ENST00000375446 RB1CC1Q8TDY2 1594 aa44.43■■■■■ 4.7
NINJ1-201ENST00000375446 DCAF8L2P0C7V8 631 aa44.4■■■■■ 4.7
NINJ1-201ENST00000375446 NACADO15069 1562 aa44.36■■■■■ 4.69
NINJ1-201ENST00000375446 ZCCHC6Q5VYS8 1495 aaKnown RBP44.13■■■■■ 4.65
NINJ1-201ENST00000375446 MYO15BQ96JP2 1530 aa44.07■■■■■ 4.65
NINJ1-201ENST00000375446 DCAF1Q9Y4B6 1507 aa43.83■■■■■ 4.61
NINJ1-201ENST00000375446 UNC13AQ9UPW8 1703 aa43.32■■■■■ 4.53
NINJ1-201ENST00000375446 PABPN1Q86U42 306 aaKnown RBP eCLIP43.28■■■■■ 4.52
NINJ1-201ENST00000375446 BICRAQ9NZM4 1560 aa43.09■■■■■ 4.49
NINJ1-201ENST00000375446 SCRIBQ14160 1630 aa43.01■■■■■ 4.48
NINJ1-201ENST00000375446 SHROOM4Q9ULL8 1493 aa42.64■■■■■ 4.42
NINJ1-201ENST00000375446 DNAJC5BQ9UF47 199 aa42.63■■■■■ 4.41
NINJ1-201ENST00000375446 EIF4G1Q04637 1599 aaKnown RBP41.97■■■■■ 4.31
NINJ1-201ENST00000375446 CC2D2AQ9P2K1 1620 aa41.83■■■■■ 4.29
NINJ1-201ENST00000375446 CECR2Q9BXF3 1484 aa41.61■■■■■ 4.25
NINJ1-201ENST00000375446 SMARCA4P51532 1647 aa41.12■■■■■ 4.17
NINJ1-201ENST00000375446 BAZ1AQ9NRL2 1556 aaPredicted RBP41.08■■■■■ 4.17
NINJ1-201ENST00000375446 ATAD2BQ9ULI0 1458 aa40.98■■■■■ 4.15
NINJ1-201ENST00000375446 NCAPD3P42695 1498 aa40.97■■■■■ 4.15
NINJ1-201ENST00000375446 SMARCA2P51531 1590 aa40.9■■■■■ 4.14
NINJ1-201ENST00000375446 MROH2BQ7Z745 1585 aa40.86■■■■■ 4.13
NINJ1-201ENST00000375446 PEG3Q9GZU2 1588 aa40.73■■■■■ 4.11
NINJ1-201ENST00000375446 HMGXB3Q12766 1538 aa40.72■■■■■ 4.11
NINJ1-201ENST00000375446 BAZ1BQ9UIG0 1483 aaKnown RBP40.63■■■■■ 4.09
NINJ1-201ENST00000375446 RSF1Q96T23 1441 aaPredicted RBP40.37■■■■■ 4.05
NINJ1-201ENST00000375446 WIZO95785 1651 aa40.36■■■■■ 4.05
NINJ1-201ENST00000375446 NESP48681 1621 aa40.02■■■■■ 4
NINJ1-201ENST00000375446 TOP2AP11388 1531 aaKnown RBP39.96■■■■□ 3.99
NINJ1-201ENST00000375446 ERCC6Q03468 1493 aa39.91■■■■□ 3.98
NINJ1-201ENST00000375446 LAMC3Q9Y6N6 1575 aa39.86■■■■□ 3.97
NINJ1-201ENST00000375446 CADPSQ9ULU8 1353 aa39.79■■■■□ 3.96
NINJ1-201ENST00000375446 PDS5BQ9NTI5 1447 aa39.65■■■■□ 3.94
NINJ1-201ENST00000375446 CCDC88BA6NC98 1476 aa39.51■■■■□ 3.92
NINJ1-201ENST00000375446 CUX2O14529 1486 aa39.51■■■■□ 3.92
NINJ1-201ENST00000375446 CFTRP13569 1480 aa39.51■■■■□ 3.92
NINJ1-201ENST00000375446 KIF21AQ7Z4S6 1674 aa39.46■■■■□ 3.91
NINJ1-201ENST00000375446 THOC2Q8NI27 1593 aaKnown RBP39.38■■■■□ 3.9
NINJ1-201ENST00000375446 FANCD2Q9BXW9 1451 aa39.32■■■■□ 3.89
NINJ1-201ENST00000375446 SUPT5HO00267 1087 aaKnown RBP39.3■■■■□ 3.88
NINJ1-201ENST00000375446 CEP164Q9UPV0 1460 aa39.27■■■■□ 3.88
NINJ1-201ENST00000375446 MRC2Q9UBG0 1479 aa39.24■■■■□ 3.87
NINJ1-201ENST00000375446 WDR62O43379 1518 aa39.09■■■■□ 3.85
NINJ1-201ENST00000375446 PRDM2Q13029 1718 aa39.06■■■■□ 3.84
NINJ1-201ENST00000375446 URB2Q14146 1524 aaKnown RBP38.93■■■■□ 3.82
NINJ1-201ENST00000375446 TOPBP1Q92547 1522 aa38.67■■■■□ 3.78
NINJ1-201ENST00000375446 ABCC8Q09428 1581 aa38.65■■■■□ 3.78
NINJ1-201ENST00000375446 DNMBPQ6XZF7 1577 aa38.59■■■■□ 3.77
NINJ1-201ENST00000375446 DNAJC5Q9H3Z4 198 aa38.49■■■■□ 3.75
NINJ1-201ENST00000375446 IFT140Q96RY7 1462 aa38.46■■■■□ 3.75
NINJ1-201ENST00000375446 POLA1P09884 1462 aaPredicted RBP38.34■■■■□ 3.73
NINJ1-201ENST00000375446 CUX1P39880 1505 aa38.33■■■■□ 3.73
NINJ1-201ENST00000375446 ZNF608Q9ULD9 1512 aaPredicted RBP38.3■■■■□ 3.72
NINJ1-201ENST00000375446 FGD5Q6ZNL6 1462 aa38.22■■■■□ 3.71
NINJ1-201ENST00000375446 TARBP1Q13395 1621 aaKnown RBP38.22■■■■□ 3.71
NINJ1-201ENST00000375446 SOGA1O94964 1423 aa38.2■■■■□ 3.71
NINJ1-201ENST00000375446 RAD54L2Q9Y4B4 1467 aa38.18■■■■□ 3.7
NINJ1-201ENST00000375446 EIF4G3O43432 1585 aaKnown RBP38.1■■■■□ 3.69
NINJ1-201ENST00000375446 AQRO60306 1485 aaKnown RBP eCLIP38.08■■■■□ 3.698e-7■□□□□ 9.1
NINJ1-201ENST00000375446 WRNQ14191 1432 aaPredicted RBP eCLIP38.06■■■■□ 3.68
NINJ1-201ENST00000375446 TDRD9Q8NDG6 1382 aaKnown RBP38.01■■■■□ 3.68
NINJ1-201ENST00000375446 TOP2BQ02880 1626 aa37.94■■■■□ 3.66
NINJ1-201ENST00000375446 SYNJ1O43426 1573 aa37.93■■■■□ 3.66
NINJ1-201ENST00000375446 BIVM-ERCC5R4GMW8 1640 aa37.91■■■■□ 3.66
NINJ1-201ENST00000375446 OSCARQ8IYS5 282 aa37.9■■■■□ 3.66
NINJ1-201ENST00000375446 WDR97A6NE52 1622 aa37.9■■■■□ 3.66
NINJ1-201ENST00000375446 ABCA10Q8WWZ4 1543 aa37.85■■■■□ 3.65
NINJ1-201ENST00000375446 GRIN2BQ13224 1484 aa37.76■■■■□ 3.63
NINJ1-201ENST00000375446 GAPVD1Q14C86 1478 aa37.74■■■■□ 3.63
NINJ1-201ENST00000375446 SNAPC4Q5SXM2 1469 aa37.71■■■■□ 3.63
NINJ1-201ENST00000375446 FBLN2P98095 1184 aa37.68■■■■□ 3.62
NINJ1-201ENST00000375446 ABCA5Q8WWZ7 1642 aa37.66■■■■□ 3.62
NINJ1-201ENST00000375446 MAGI1Q96QZ7 1491 aaPredicted RBP37.65■■■■□ 3.62
NINJ1-201ENST00000375446 CHD1O14646 1710 aa37.59■■■■□ 3.61
NINJ1-201ENST00000375446 PBRM1Q86U86 1689 aa37.56■■■■□ 3.6
NINJ1-201ENST00000375446 CHMP7Q8WUX9 453 aaPredicted RBP37.55■■■■□ 3.6
NINJ1-201ENST00000375446 SYNJ2O15056 1496 aa37.52■■■■□ 3.6
NINJ1-201ENST00000375446 ERICH3Q5RHP9 1530 aa37.38■■■■□ 3.57
NINJ1-201ENST00000375446 ADAMTS12P58397 1594 aa37.33■■■■□ 3.57
NINJ1-201ENST00000375446 FHAD1B1AJZ9 1412 aa37.31■■■■□ 3.56
NINJ1-201ENST00000375446 KIF27Q86VH2 1401 aa37.28■■■■□ 3.56
NINJ1-201ENST00000375446 GRIN2AQ12879 1464 aa37.26■■■■□ 3.55
NINJ1-201ENST00000375446 ARHGEF11O15085 1522 aa37.25■■■■□ 3.55
NINJ1-201ENST00000375446 CLASP1Q7Z460 1538 aa37.25■■■■□ 3.55
NINJ1-201ENST00000375446 RIMBP3CA6NJZ7 1639 aa37.23■■■■□ 3.55
NINJ1-201ENST00000375446 RIMBP3BA6NNM3 1639 aa37.23■■■■□ 3.55
NINJ1-201ENST00000375446 RIMBP3Q9UFD9 1639 aa37.23■■■■□ 3.55
NINJ1-201ENST00000375446 TRIM41Q8WV44 630 aa37.19■■■■□ 3.54
NINJ1-201ENST00000375446 IGF1RP08069 1367 aa37.17■■■■□ 3.54
NINJ1-201ENST00000375446 NUP160Q12769 1436 aa37.1■■■■□ 3.53
NINJ1-201ENST00000375446 CEP170Q5SW79 1584 aa37.05■■■■□ 3.52
NINJ1-201ENST00000375446 CUL7Q14999 1698 aa36.98■■■■□ 3.51
NINJ1-201ENST00000375446 CYB5RLQ6IPT4 315 aa36.96■■■■□ 3.51
NINJ1-201ENST00000375446 ARAP1Q96P48 1450 aa36.95■■■■□ 3.51
NINJ1-201ENST00000375446 CARMIL1Q5VZK9 1371 aa36.93■■■■□ 3.5
NINJ1-201ENST00000375446 RUSC2Q8N2Y8 1516 aa36.9■■■■□ 3.5
NINJ1-201ENST00000375446 SHROOM2Q13796 1616 aa36.78■■■■□ 3.48
NINJ1-201ENST00000375446 JPH4Q96JJ6 628 aa36.76■■■■□ 3.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms