RNA–Protein interactions for RNA: ENST00000594439.5

HOMER3-206, Transcript of homer scaffold protein 3, humanhuman

TSL 1 (best) BASIC

Gene HOMER3, Length 982 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-206ENST00000594439 NISCHQ9Y2I1 1504 aa53.36■■■■■ 6.13
HOMER3-206ENST00000594439 CCDC180Q9P1Z9 1646 aa47.45■■■■■ 5.19
HOMER3-206ENST00000594439 ABCC9O60706 1549 aa46.38■■■■■ 5.01
HOMER3-206ENST00000594439 RB1CC1Q8TDY2 1594 aa44.62■■■■■ 4.73
HOMER3-206ENST00000594439 NACADO15069 1562 aa44.58■■■■■ 4.73
HOMER3-206ENST00000594439 DCAF8L2P0C7V8 631 aa44.49■■■■■ 4.71
HOMER3-206ENST00000594439 ZCCHC6Q5VYS8 1495 aaKnown RBP44.46■■■■■ 4.71
HOMER3-206ENST00000594439 MYO15BQ96JP2 1530 aa44.33■■■■■ 4.69
HOMER3-206ENST00000594439 DCAF1Q9Y4B6 1507 aa44.15■■■■■ 4.66
HOMER3-206ENST00000594439 UNC13AQ9UPW8 1703 aa43.68■■■■■ 4.58
HOMER3-206ENST00000594439 BICRAQ9NZM4 1560 aa43.33■■■■■ 4.53
HOMER3-206ENST00000594439 PABPN1Q86U42 306 aaKnown RBP eCLIP43.32■■■■■ 4.53
HOMER3-206ENST00000594439 SCRIBQ14160 1630 aa43.27■■■■■ 4.52
HOMER3-206ENST00000594439 SHROOM4Q9ULL8 1493 aa42.82■■■■■ 4.45
HOMER3-206ENST00000594439 DNAJC5BQ9UF47 199 aa42.58■■■■■ 4.41
HOMER3-206ENST00000594439 EIF4G1Q04637 1599 aaKnown RBP42.14■■■■■ 4.34
HOMER3-206ENST00000594439 CC2D2AQ9P2K1 1620 aa41.98■■■■■ 4.31
HOMER3-206ENST00000594439 CECR2Q9BXF3 1484 aa41.66■■■■■ 4.26
HOMER3-206ENST00000594439 SMARCA4P51532 1647 aa41.4■■■■■ 4.22
HOMER3-206ENST00000594439 BAZ1AQ9NRL2 1556 aaPredicted RBP41.34■■■■■ 4.21
HOMER3-206ENST00000594439 ATAD2BQ9ULI0 1458 aa41.16■■■■■ 4.18
HOMER3-206ENST00000594439 NCAPD3P42695 1498 aa41.14■■■■■ 4.18
HOMER3-206ENST00000594439 MROH2BQ7Z745 1585 aa41.13■■■■■ 4.18
HOMER3-206ENST00000594439 SMARCA2P51531 1590 aa41.11■■■■■ 4.17
HOMER3-206ENST00000594439 PEG3Q9GZU2 1588 aa41.01■■■■■ 4.16
HOMER3-206ENST00000594439 HMGXB3Q12766 1538 aa40.94■■■■■ 4.14
HOMER3-206ENST00000594439 BAZ1BQ9UIG0 1483 aaKnown RBP40.81■■■■■ 4.12
HOMER3-206ENST00000594439 WIZO95785 1651 aa40.69■■■■■ 4.1
HOMER3-206ENST00000594439 RSF1Q96T23 1441 aaPredicted RBP40.65■■■■■ 4.1
HOMER3-206ENST00000594439 TOP2AP11388 1531 aaKnown RBP40.26■■■■■ 4.03
HOMER3-206ENST00000594439 NESP48681 1621 aa40.16■■■■■ 4.02
HOMER3-206ENST00000594439 LAMC3Q9Y6N6 1575 aa40.05■■■■■ 4
HOMER3-206ENST00000594439 ERCC6Q03468 1493 aa39.94■■■■□ 3.98
HOMER3-206ENST00000594439 CADPSQ9ULU8 1353 aa39.93■■■■□ 3.98
HOMER3-206ENST00000594439 CCDC88BA6NC98 1476 aa39.77■■■■□ 3.96
HOMER3-206ENST00000594439 PDS5BQ9NTI5 1447 aa39.75■■■■□ 3.95
HOMER3-206ENST00000594439 KIF21AQ7Z4S6 1674 aa39.7■■■■□ 3.95
HOMER3-206ENST00000594439 CFTRP13569 1480 aa39.7■■■■□ 3.95
HOMER3-206ENST00000594439 SUPT5HO00267 1087 aaKnown RBP39.58■■■■□ 3.93
HOMER3-206ENST00000594439 THOC2Q8NI27 1593 aaKnown RBP39.57■■■■□ 3.92
HOMER3-206ENST00000594439 CUX2O14529 1486 aa39.54■■■■□ 3.92
HOMER3-206ENST00000594439 FANCD2Q9BXW9 1451 aa39.47■■■■□ 3.91
HOMER3-206ENST00000594439 PRDM2Q13029 1718 aa39.45■■■■□ 3.91
HOMER3-206ENST00000594439 CEP164Q9UPV0 1460 aa39.42■■■■□ 3.9
HOMER3-206ENST00000594439 MRC2Q9UBG0 1479 aa39.37■■■■□ 3.89
HOMER3-206ENST00000594439 WDR62O43379 1518 aa39.25■■■■□ 3.87
HOMER3-206ENST00000594439 URB2Q14146 1524 aaKnown RBP39.1■■■■□ 3.85
HOMER3-206ENST00000594439 TOPBP1Q92547 1522 aa38.86■■■■□ 3.81
HOMER3-206ENST00000594439 ABCC8Q09428 1581 aa38.82■■■■□ 3.81
HOMER3-206ENST00000594439 DNMBPQ6XZF7 1577 aa38.82■■■■□ 3.8
HOMER3-206ENST00000594439 IFT140Q96RY7 1462 aa38.6■■■■□ 3.77
HOMER3-206ENST00000594439 CUX1P39880 1505 aa38.58■■■■□ 3.77
HOMER3-206ENST00000594439 POLA1P09884 1462 aaPredicted RBP38.53■■■■□ 3.76
HOMER3-206ENST00000594439 TARBP1Q13395 1621 aaKnown RBP38.45■■■■□ 3.75
HOMER3-206ENST00000594439 ZNF608Q9ULD9 1512 aaPredicted RBP38.44■■■■□ 3.74
HOMER3-206ENST00000594439 FGD5Q6ZNL6 1462 aa38.44■■■■□ 3.74
HOMER3-206ENST00000594439 RAD54L2Q9Y4B4 1467 aa38.36■■■■□ 3.73
HOMER3-206ENST00000594439 SOGA1O94964 1423 aa38.35■■■■□ 3.73
HOMER3-206ENST00000594439 WRNQ14191 1432 aaPredicted RBP eCLIP38.31■■■■□ 3.72
HOMER3-206ENST00000594439 DNAJC5Q9H3Z4 198 aa38.31■■■■□ 3.72
HOMER3-206ENST00000594439 EIF4G3O43432 1585 aaKnown RBP38.29■■■■□ 3.72
HOMER3-206ENST00000594439 BIVM-ERCC5R4GMW8 1640 aa38.27■■■■□ 3.72
HOMER3-206ENST00000594439 SYNJ1O43426 1573 aa38.25■■■■□ 3.71
HOMER3-206ENST00000594439 TOP2BQ02880 1626 aa38.25■■■■□ 3.71
HOMER3-206ENST00000594439 AQRO60306 1485 aaKnown RBP eCLIP38.21■■■■□ 3.71
HOMER3-206ENST00000594439 WDR97A6NE52 1622 aa38.16■■■■□ 3.7
HOMER3-206ENST00000594439 TDRD9Q8NDG6 1382 aaKnown RBP38.14■■■■□ 3.7
HOMER3-206ENST00000594439 ABCA10Q8WWZ4 1543 aa38.07■■■■□ 3.68
HOMER3-206ENST00000594439 ABCA5Q8WWZ7 1642 aa37.94■■■■□ 3.66
HOMER3-206ENST00000594439 GAPVD1Q14C86 1478 aa37.91■■■■□ 3.66
HOMER3-206ENST00000594439 GRIN2BQ13224 1484 aa37.9■■■■□ 3.66
HOMER3-206ENST00000594439 OSCARQ8IYS5 282 aa37.88■■■■□ 3.65
HOMER3-206ENST00000594439 PBRM1Q86U86 1689 aa37.87■■■■□ 3.65
HOMER3-206ENST00000594439 SNAPC4Q5SXM2 1469 aa37.86■■■■□ 3.65
HOMER3-206ENST00000594439 CHD1O14646 1710 aa37.83■■■■□ 3.65
HOMER3-206ENST00000594439 MAGI1Q96QZ7 1491 aaPredicted RBP37.8■■■■□ 3.64
HOMER3-206ENST00000594439 FBLN2P98095 1184 aa37.7■■■■□ 3.63
HOMER3-206ENST00000594439 SYNJ2O15056 1496 aa37.66■■■■□ 3.62
HOMER3-206ENST00000594439 CHMP7Q8WUX9 453 aaPredicted RBP37.61■■■■□ 3.61
HOMER3-206ENST00000594439 ERICH3Q5RHP9 1530 aa37.61■■■■□ 3.61
HOMER3-206ENST00000594439 ADAMTS12P58397 1594 aa37.57■■■■□ 3.6
HOMER3-206ENST00000594439 KIF27Q86VH2 1401 aa37.5■■■■□ 3.59
HOMER3-206ENST00000594439 FHAD1B1AJZ9 1412 aa37.47■■■■□ 3.59
HOMER3-206ENST00000594439 GRIN2AQ12879 1464 aa37.42■■■■□ 3.58
HOMER3-206ENST00000594439 CLASP1Q7Z460 1538 aa37.41■■■■□ 3.58
HOMER3-206ENST00000594439 TRIM41Q8WV44 630 aa37.37■■■■□ 3.57
HOMER3-206ENST00000594439 IGF1RP08069 1367 aa37.37■■■■□ 3.57
HOMER3-206ENST00000594439 RIMBP3CA6NJZ7 1639 aa37.33■■■■□ 3.57
HOMER3-206ENST00000594439 RIMBP3BA6NNM3 1639 aa37.33■■■■□ 3.57
HOMER3-206ENST00000594439 RIMBP3Q9UFD9 1639 aa37.33■■■■□ 3.57
HOMER3-206ENST00000594439 ARHGEF11O15085 1522 aa37.31■■■■□ 3.56
HOMER3-206ENST00000594439 CUL7Q14999 1698 aa37.28■■■■□ 3.56
HOMER3-206ENST00000594439 NUP160Q12769 1436 aa37.27■■■■□ 3.56
HOMER3-206ENST00000594439 CEP170Q5SW79 1584 aa37.26■■■■□ 3.56
HOMER3-206ENST00000594439 RUSC2Q8N2Y8 1516 aa37.21■■■■□ 3.55
HOMER3-206ENST00000594439 CARMIL1Q5VZK9 1371 aa37.13■■■■□ 3.53
HOMER3-206ENST00000594439 ARAP1Q96P48 1450 aa37.02■■■■□ 3.52
HOMER3-206ENST00000594439 SHROOM2Q13796 1616 aa37.01■■■■□ 3.52
HOMER3-206ENST00000594439 CHIC1Q5VXU3 224 aa36.98■■■■□ 3.51
HOMER3-206ENST00000594439 CYB5RLQ6IPT4 315 aa36.92■■■■□ 3.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms