RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 NISCHQ9Y2I1 1504 aa53.07■■■■■ 6.09
VPS53-216ENST00000574029 CCDC180Q9P1Z9 1646 aa47.69■■■■■ 5.22
VPS53-216ENST00000574029 ABCC9O60706 1549 aa47.65■■■■■ 5.22
VPS53-216ENST00000574029 RB1CC1Q8TDY2 1594 aa45.38■■■■■ 4.86
VPS53-216ENST00000574029 NACADO15069 1562 aa45.07■■■■■ 4.81
VPS53-216ENST00000574029 DNAJC5BQ9UF47 199 aa44.75■■■■■ 4.75
VPS53-216ENST00000574029 DCAF8L2P0C7V8 631 aa44.7■■■■■ 4.75
VPS53-216ENST00000574029 MYO15BQ96JP2 1530 aa44.47■■■■■ 4.71
VPS53-216ENST00000574029 UNC13AQ9UPW8 1703 aa44.4■■■■■ 4.7
VPS53-216ENST00000574029 PABPN1Q86U42 306 aaKnown RBP eCLIP44.33■■■■■ 4.69
VPS53-216ENST00000574029 BICRAQ9NZM4 1560 aa44.09■■■■■ 4.65
VPS53-216ENST00000574029 ZCCHC6Q5VYS8 1495 aaKnown RBP43.98■■■■■ 4.63
VPS53-216ENST00000574029 DCAF1Q9Y4B6 1507 aa43.88■■■■■ 4.61
VPS53-216ENST00000574029 SHROOM4Q9ULL8 1493 aa43.5■■■■■ 4.55
VPS53-216ENST00000574029 SCRIBQ14160 1630 aa43.38■■■■■ 4.54
VPS53-216ENST00000574029 CC2D2AQ9P2K1 1620 aa43.08■■■■■ 4.49
VPS53-216ENST00000574029 EIF4G1Q04637 1599 aaKnown RBP42.99■■■■■ 4.47
VPS53-216ENST00000574029 CECR2Q9BXF3 1484 aa42.94■■■■■ 4.47
VPS53-216ENST00000574029 NCAPD3P42695 1498 aa41.6■■■■■ 4.25
VPS53-216ENST00000574029 ATAD2BQ9ULI0 1458 aa41.46■■■■■ 4.23
VPS53-216ENST00000574029 SMARCA4P51532 1647 aa41.42■■■■■ 4.22
VPS53-216ENST00000574029 SMARCA2P51531 1590 aa41.35■■■■■ 4.21
VPS53-216ENST00000574029 HMGXB3Q12766 1538 aa41.3■■■■■ 4.2
VPS53-216ENST00000574029 BAZ1AQ9NRL2 1556 aaPredicted RBP41.2■■■■■ 4.19
VPS53-216ENST00000574029 DNAJC5Q9H3Z4 198 aa41.14■■■■■ 4.18
VPS53-216ENST00000574029 CUX2O14529 1486 aa41.13■■■■■ 4.17
VPS53-216ENST00000574029 ERCC6Q03468 1493 aa41.13■■■■■ 4.17
VPS53-216ENST00000574029 PEG3Q9GZU2 1588 aa41.05■■■■■ 4.16
VPS53-216ENST00000574029 BAZ1BQ9UIG0 1483 aaKnown RBP41.03■■■■■ 4.16
VPS53-216ENST00000574029 NESP48681 1621 aa40.93■■■■■ 4.14
VPS53-216ENST00000574029 MROH2BQ7Z745 1585 aa40.89■■■■■ 4.14
VPS53-216ENST00000574029 LAMC3Q9Y6N6 1575 aa40.69■■■■■ 4.1
VPS53-216ENST00000574029 THOC2Q8NI27 1593 aaKnown RBP40.57■■■■■ 4.09
VPS53-216ENST00000574029 KIF21AQ7Z4S6 1674 aa40.44■■■■■ 4.06
VPS53-216ENST00000574029 PDS5BQ9NTI5 1447 aa40.42■■■■■ 4.06
VPS53-216ENST00000574029 WIZO95785 1651 aa40.4■■■■■ 4.06
VPS53-216ENST00000574029 CADPSQ9ULU8 1353 aa40.32■■■■■ 4.04
VPS53-216ENST00000574029 MRC2Q9UBG0 1479 aa40.07■■■■■ 4.01
VPS53-216ENST00000574029 WDR62O43379 1518 aa40.01■■■■■ 4
VPS53-216ENST00000574029 RSF1Q96T23 1441 aaPredicted RBP40.01■■■■■ 4
VPS53-216ENST00000574029 CEP164Q9UPV0 1460 aa39.9■■■■□ 3.98
VPS53-216ENST00000574029 TOP2AP11388 1531 aaKnown RBP39.89■■■■□ 3.98
VPS53-216ENST00000574029 CFTRP13569 1480 aa39.87■■■■□ 3.97
VPS53-216ENST00000574029 FANCD2Q9BXW9 1451 aa39.85■■■■□ 3.97
VPS53-216ENST00000574029 URB2Q14146 1524 aaKnown RBP39.55■■■■□ 3.92
VPS53-216ENST00000574029 PRDM2Q13029 1718 aa39.51■■■■□ 3.91
VPS53-216ENST00000574029 CCDC88BA6NC98 1476 aa39.43■■■■□ 3.9
VPS53-216ENST00000574029 TRIM41Q8WV44 630 aa39.24■■■■□ 3.87
VPS53-216ENST00000574029 OSCARQ8IYS5 282 aa39.21■■■■□ 3.87
VPS53-216ENST00000574029 IFT140Q96RY7 1462 aa39.11■■■■□ 3.85
VPS53-216ENST00000574029 TOPBP1Q92547 1522 aa39.1■■■■□ 3.85
VPS53-216ENST00000574029 ZNF608Q9ULD9 1512 aaPredicted RBP39.04■■■■□ 3.84
VPS53-216ENST00000574029 ABCC8Q09428 1581 aa39.04■■■■□ 3.84
VPS53-216ENST00000574029 DNMBPQ6XZF7 1577 aa38.97■■■■□ 3.83
VPS53-216ENST00000574029 EIF4G3O43432 1585 aaKnown RBP38.85■■■■□ 3.81
VPS53-216ENST00000574029 TARBP1Q13395 1621 aaKnown RBP38.79■■■■□ 3.8
VPS53-216ENST00000574029 RIMBP3CA6NJZ7 1639 aa38.74■■■■□ 3.79
VPS53-216ENST00000574029 RIMBP3BA6NNM3 1639 aa38.74■■■■□ 3.79
VPS53-216ENST00000574029 RIMBP3Q9UFD9 1639 aa38.74■■■■□ 3.79
VPS53-216ENST00000574029 POLA1P09884 1462 aaPredicted RBP38.7■■■■□ 3.79
VPS53-216ENST00000574029 AQRO60306 1485 aaKnown RBP eCLIP38.67■■■■□ 3.787e-8■■■■■ 27.9
VPS53-216ENST00000574029 ARHGEF11O15085 1522 aa38.6■■■■□ 3.77
VPS53-216ENST00000574029 CHD1O14646 1710 aa38.58■■■■□ 3.77
VPS53-216ENST00000574029 RAD54L2Q9Y4B4 1467 aa38.54■■■■□ 3.76
VPS53-216ENST00000574029 SOGA1O94964 1423 aa38.51■■■■□ 3.76
VPS53-216ENST00000574029 FGD5Q6ZNL6 1462 aa38.45■■■■□ 3.75
VPS53-216ENST00000574029 CUX1P39880 1505 aa38.42■■■■□ 3.74
VPS53-216ENST00000574029 TDRD9Q8NDG6 1382 aaKnown RBP38.42■■■■□ 3.74
VPS53-216ENST00000574029 WDR97A6NE52 1622 aa38.41■■■■□ 3.74
VPS53-216ENST00000574029 FBLN2P98095 1184 aa38.38■■■■□ 3.73
VPS53-216ENST00000574029 SNAPC4Q5SXM2 1469 aa38.28■■■■□ 3.72
VPS53-216ENST00000574029 CYB5RLQ6IPT4 315 aa38.27■■■■□ 3.72
VPS53-216ENST00000574029 ARAP1Q96P48 1450 aa38.21■■■■□ 3.71
VPS53-216ENST00000574029 MAGI1Q96QZ7 1491 aaPredicted RBP38.21■■■■□ 3.71
VPS53-216ENST00000574029 GRIN2BQ13224 1484 aa38.19■■■■□ 3.7
VPS53-216ENST00000574029 CLASP1Q7Z460 1538 aa38.14■■■■□ 3.7
VPS53-216ENST00000574029 SUPT5HO00267 1087 aaKnown RBP38.12■■■■□ 3.69
VPS53-216ENST00000574029 CHMP7Q8WUX9 453 aaPredicted RBP38.12■■■■□ 3.69
VPS53-216ENST00000574029 SYNJ1O43426 1573 aa38.1■■■■□ 3.69
VPS53-216ENST00000574029 SYNJ2O15056 1496 aa38.08■■■■□ 3.69
VPS53-216ENST00000574029 PBRM1Q86U86 1689 aa38.07■■■■□ 3.69
VPS53-216ENST00000574029 GAPVD1Q14C86 1478 aa38.05■■■■□ 3.68
VPS53-216ENST00000574029 ABCA10Q8WWZ4 1543 aa38.02■■■■□ 3.68
VPS53-216ENST00000574029 ABCA5Q8WWZ7 1642 aa37.99■■■■□ 3.67
VPS53-216ENST00000574029 TRHP20396 242 aaPredicted RBP37.83■■■■□ 3.65
VPS53-216ENST00000574029 WRNQ14191 1432 aaPredicted RBP eCLIP37.83■■■■□ 3.65
VPS53-216ENST00000574029 BIVM-ERCC5R4GMW8 1640 aa37.83■■■■□ 3.65
VPS53-216ENST00000574029 TOP2BQ02880 1626 aa37.8■■■■□ 3.64
VPS53-216ENST00000574029 GRIN2AQ12879 1464 aa37.71■■■■□ 3.63
VPS53-216ENST00000574029 ADAMTS12P58397 1594 aa37.69■■■■□ 3.62
VPS53-216ENST00000574029 NUP160Q12769 1436 aa37.6■■■■□ 3.61
VPS53-216ENST00000574029 CEP170Q5SW79 1584 aa37.59■■■■□ 3.61
VPS53-216ENST00000574029 FHAD1B1AJZ9 1412 aa37.57■■■■□ 3.6
VPS53-216ENST00000574029 ERICH3Q5RHP9 1530 aa37.56■■■■□ 3.6
VPS53-216ENST00000574029 ERCC6L2Q5T890 1561 aa37.52■■■■□ 3.6
VPS53-216ENST00000574029 SHROOM2Q13796 1616 aa37.47■■■■□ 3.59
VPS53-216ENST00000574029 PRG4Q92954 1404 aaPredicted RBP37.2■■■■□ 3.55
VPS53-216ENST00000574029 RUSC2Q8N2Y8 1516 aa37.17■■■■□ 3.54
VPS53-216ENST00000574029 JPH4Q96JJ6 628 aa37.17■■■■□ 3.54
VPS53-216ENST00000574029 IGF1RP08069 1367 aa37.04■■■■□ 3.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms