Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 DNMT1-202ENST00000359526 5206 ntTSL 1 (best) BASIC12.43□□□□□ -0.429e-6■■■■□ 24.8
SMNDC1O75940 PLEKHA6-205ENST00000637508 5704 ntTSL 5 BASIC12.31□□□□□ -0.449e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-214ENST00000573677 646 ntTSL 412.27□□□□□ -0.459e-6■■■■□ 24.8
SMNDC1O75940 PLEKHA6-202ENST00000414478 5091 ntTSL 5 BASIC12.05□□□□□ -0.489e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-216ENST00000615544 1723 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.494e-10■■■■□ 24.8
SMNDC1O75940 ACTG1-203ENST00000571691 761 ntTSL 311.89□□□□□ -0.514e-10■■■■□ 24.8
SMNDC1O75940 BAIAP2-218ENST00000574804 631 ntTSL 311.86□□□□□ -0.519e-6■■■■□ 24.8
SMNDC1O75940 JAG1-207ENST00000617965 837 ntTSL 511.78□□□□□ -0.529e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-202ENST00000570382 471 ntTSL 411.7□□□□□ -0.544e-10■■■■□ 24.8
SMNDC1O75940 DNMT1-205ENST00000585920 529 ntTSL 311.65□□□□□ -0.549e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-211ENST00000575994 856 ntTSL 311.62□□□□□ -0.554e-10■■■■□ 24.8
SMNDC1O75940 ACTG1-212ENST00000576209 1698 ntTSL 1 (best)11.58□□□□□ -0.569e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-214ENST00000576544 1720 ntTSL 511.49□□□□□ -0.574e-10■■■■□ 24.8
SMNDC1O75940 TOP3A-214ENST00000582981 3239 ntTSL 211.44□□□□□ -0.589e-6■■■■□ 24.8
SMNDC1O75940 ACTG1-213ENST00000576214 1024 ntTSL 511.37□□□□□ -0.594e-10■■■■□ 24.8
SMNDC1O75940 CSNK1D-207ENST00000578194 567 ntTSL 411.34□□□□□ -0.594e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-217ENST00000584582 3661 ntTSL 511.32□□□□□ -0.69e-6■■■■□ 24.8
SMNDC1O75940 CLASRP-207ENST00000587112 867 ntTSL 1 (best)11.25□□□□□ -0.612e-6■■■■□ 24.8
SMNDC1O75940 PLEKHA6-201ENST00000272203 7401 ntAPPRIS P1 TSL 1 (best) BASIC11.21□□□□□ -0.619e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-222ENST00000575841 509 ntTSL 211.2□□□□□ -0.629e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-201ENST00000321105 4056 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.649e-6■■■■□ 24.8
SMNDC1O75940 TOP3B-210ENST00000444502 4163 ntTSL 210.99□□□□□ -0.652e-6■■■■□ 24.8
SMNDC1O75940 DYNC1H1-201ENST00000360184 14333 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.669e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-203ENST00000395867 5141 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.689e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-209ENST00000580095 2929 ntTSL 1 (best)10.71□□□□□ -0.79e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-223ENST00000575958 567 ntTSL 410.43□□□□□ -0.749e-6■■■■□ 24.8
SMNDC1O75940 DNMT1-219ENST00000589349 603 ntTSL 410.22□□□□□ -0.779e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-226ENST00000576364 542 ntTSL 510.17□□□□□ -0.789e-6■■■■□ 24.8
SMNDC1O75940 GSPT1-208ENST00000565267 1864 ntTSL 510.09□□□□□ -0.799e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-208ENST00000542570 4116 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.89e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-216ENST00000583804 1465 ntTSL 510.07□□□□□ -0.89e-6■■■■□ 24.8
SMNDC1O75940 CLASRP-213ENST00000591410 572 ntTSL 49.98□□□□□ -0.812e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-209ENST00000562872 559 ntTSL 49.95□□□□□ -0.829e-6■■■■□ 24.8
SMNDC1O75940 TOP3A-203ENST00000469739 3196 ntTSL 29.82□□□□□ -0.849e-6■■■■□ 24.8
SMNDC1O75940 CSNK1D-226ENST00000585026 563 ntTSL 59.73□□□□□ -0.854e-6■■■■□ 24.8
SMNDC1O75940 GSPT1-206ENST00000563468 1962 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.899e-6■■■■□ 24.8
SMNDC1O75940 PPM1G-202ENST00000472077 3752 ntTSL 29.46□□□□□ -0.99e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-213ENST00000564484 562 ntTSL 59.34□□□□□ -0.919e-6■■■■□ 24.8
SMNDC1O75940 GSPT1-201ENST00000420576 1603 ntAPPRIS ALT2 TSL 1 (best) BASIC8.94□□□□□ -0.989e-6■■■■□ 24.8
SMNDC1O75940 SRSF11-208ENST00000463859 1035 ntTSL 58.87□□□□□ -0.999e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-205ENST00000395874 436 ntTSL 38.81□□□□□ -19e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-213ENST00000573659 578 ntTSL 48.7□□□□□ -1.029e-6■■■■□ 24.8
SMNDC1O75940 CLK4-202ENST00000519132 3129 ntTSL 1 (best)8.68□□□□□ -1.029e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-208ENST00000611278 4204 ntTSL 1 (best) BASIC8.43□□□□□ -1.069e-6■■■■□ 24.8
SMNDC1O75940 DNMT1-224ENST00000591764 341 ntTSL 1 (best)8.34□□□□□ -1.079e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-212ENST00000573017 574 ntTSL 48.3□□□□□ -1.089e-6■■■■□ 24.8
SMNDC1O75940 SRSF11-205ENST00000460795 528 ntTSL 27.66□□□□□ -1.189e-6■■■■□ 24.8
SMNDC1O75940 JAG1-202ENST00000423891 3758 ntTSL 27.5□□□□□ -1.219e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.38□□□□□ -1.239e-6■■■■□ 24.8
SMNDC1O75940 KLHDC4-219ENST00000567513 585 ntTSL 47.06□□□□□ -1.289e-6■■■■□ 24.8
SMNDC1O75940 BAIAP2-211ENST00000572918 626 ntTSL 46.45□□□□□ -1.389e-6■■■■□ 24.8
SMNDC1O75940 SRSF11-216ENST00000489188 784 ntTSL 26.05□□□□□ -1.449e-6■■■■□ 24.8
SMNDC1O75940 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.489e-6■■■■□ 24.8
SMNDC1O75940 LINC01355-201ENST00000566551 5444 ntBASIC5.02□□□□□ -1.619e-6■■■■□ 24.8
SMNDC1O75940 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.669e-6■■■■□ 24.8
SMNDC1O75940 SRSF11-206ENST00000461935 3501 ntTSL 1 (best)4.52□□□□□ -1.699e-6■■■■□ 24.8
SMNDC1O75940 PTMA-208ENST00000448874 1108 ntTSL 215.03■□□□□ -07e-7■■■■□ 24.8
SMNDC1O75940 PTMA-212ENST00000481928 1635 ntTSL 314.77□□□□□ -0.047e-7■■■■□ 24.8
SMNDC1O75940 PTMA-211ENST00000468027 621 ntTSL 1 (best)11.54□□□□□ -0.567e-7■■■■□ 24.8
SMNDC1O75940 PTMA-202ENST00000409115 1221 ntAPPRIS ALT1 TSL 1 (best) BASIC10.73□□□□□ -0.697e-7■■■■□ 24.8
SMNDC1O75940 PTMA-204ENST00000409683 933 ntAPPRIS ALT1 TSL 3 BASIC10.38□□□□□ -0.757e-7■■■■□ 24.8
SMNDC1O75940 PTMA-209ENST00000466801 784 ntTSL 510.31□□□□□ -0.767e-7■■■■□ 24.8
SMNDC1O75940 PTMA-203ENST00000409321 735 ntTSL 3 BASIC9.17□□□□□ -0.947e-7■■■■□ 24.8
SMNDC1O75940 PTMA-201ENST00000341369 1212 ntAPPRIS P3 TSL 1 (best) BASIC9.09□□□□□ -0.957e-7■■■■□ 24.8
SMNDC1O75940 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.392e-6■■■■□ 24.8
SMNDC1O75940 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.22e-6■■■■□ 24.8
SMNDC1O75940 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.442e-6■■■■□ 24.8
SMNDC1O75940 AKT1-215ENST00000555926 553 ntTSL 317.52■□□□□ 0.42e-6■■■■□ 24.8
SMNDC1O75940 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.322e-6■■■■□ 24.8
SMNDC1O75940 AKT1-208ENST00000554581 3916 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.392e-6■■■■□ 24.8
SMNDC1O75940 AKT1-202ENST00000402615 3913 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.572e-6■■■■□ 24.8
SMNDC1O75940 LRRC75A-AS1-218ENST00000578380 310 ntTSL 319.43■□□□□ 0.72e-24■■■■□ 24.7
SMNDC1O75940 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC17.11■□□□□ 0.331e-6■■■■□ 24.7
SMNDC1O75940 BOP1-204ENST00000569403 651 ntTSL 423.25■■□□□ 1.312e-6■■■■□ 24.6
SMNDC1O75940 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.992e-6■■■■□ 24.6
SMNDC1O75940 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.161e-51■■■■□ 24.6
SMNDC1O75940 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.191e-51■■■■□ 24.6
SMNDC1O75940 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.441e-51■■■■□ 24.6
SMNDC1O75940 EEF1B2-205ENST00000429769 912 ntTSL 510.04□□□□□ -0.81e-51■■■■□ 24.6
SMNDC1O75940 EEF1B2-208ENST00000455150 670 ntTSL 55.72□□□□□ -1.491e-51■■■■□ 24.6
SMNDC1O75940 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26.82■■□□□ 1.882e-6■■■■□ 24.6
SMNDC1O75940 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC26.51■■□□□ 1.832e-6■■■■□ 24.6
SMNDC1O75940 ATP6V1G2-DDX39B-201ENST00000376185 2039 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.378e-9■■■■□ 24.6
SMNDC1O75940 DDX39B-214ENST00000458640 2003 ntAPPRIS P1 TSL 1 (best) BASIC12.67□□□□□ -0.388e-9■■■■□ 24.6
SMNDC1O75940 DDX39B-202ENST00000396172 2133 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.98e-9■■■■□ 24.6
SMNDC1O75940 DDX39B-215ENST00000462256 4027 ntTSL 29.1□□□□□ -0.958e-9■■■■□ 24.6
SMNDC1O75940 FHOD1-202ENST00000561922 2069 ntTSL 220.25■□□□□ 0.835e-7■■■■□ 24.5
SMNDC1O75940 RPL15-212ENST00000490223 1785 ntTSL 219.46■□□□□ 0.715e-7■■■■□ 24.5
SMNDC1O75940 PKD1-235ENST00000568591 2545 ntTSL 219.21■□□□□ 0.675e-7■■■■□ 24.5
SMNDC1O75940 PKD1-221ENST00000488185 737 ntTSL 518.29■□□□□ 0.525e-7■■■■□ 24.5
SMNDC1O75940 ANP32A-202ENST00000409628 2001 ntTSL 517.68■□□□□ 0.425e-7■■■■□ 24.5
SMNDC1O75940 PKD1-230ENST00000565639 1976 ntTSL 517.65■□□□□ 0.425e-7■■■■□ 24.5
SMNDC1O75940 NELFA-213ENST00000467661 1707 ntTSL 1 (best)17.49■□□□□ 0.395e-7■■■■□ 24.5
SMNDC1O75940 RPL15-206ENST00000422218 588 ntTSL 415.73■□□□□ 0.115e-7■■■■□ 24.5
SMNDC1O75940 ANP32A-208ENST00000495420 707 ntTSL 215.58■□□□□ 0.085e-7■■■■□ 24.5
SMNDC1O75940 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.037e-10■■■■□ 24.5
SMNDC1O75940 FHOD1-207ENST00000567752 4321 ntTSL 215.26■□□□□ 0.035e-7■■■■□ 24.5
SMNDC1O75940 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.025e-7■■■■□ 24.5
SMNDC1O75940 RPL15-213ENST00000611050 2363 ntAPPRIS P1 TSL 4 BASIC15.18■□□□□ 0.025e-7■■■■□ 24.5
SMNDC1O75940 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.025e-7■■■■□ 24.5
Retrieved 100 of 11,362 protein–RNA pairs in 112.1 ms