RNA–Protein interactions for RNA: ENST00000565639.6

PKD1-230, Transcript of polycystin 1, transient receptor potential channel interacting, humanhuman

TSL 5

Gene PKD1, Length 1,976 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKD1-230ENST00000565639 NISCHQ9Y2I1 1504 aa43.96■■■■■ 4.63
PKD1-230ENST00000565639 CCDC180Q9P1Z9 1646 aa38.4■■■■□ 3.74
PKD1-230ENST00000565639 ZCCHC6Q5VYS8 1495 aaKnown RBP36.92■■■■□ 3.5
PKD1-230ENST00000565639 DCAF1Q9Y4B6 1507 aa36.42■■■■□ 3.42
PKD1-230ENST00000565639 ABCC9O60706 1549 aa36.28■■■■□ 3.4
PKD1-230ENST00000565639 DCAF8L2P0C7V8 631 aa36.21■■■■□ 3.39
PKD1-230ENST00000565639 MYO15BQ96JP2 1530 aa36.04■■■■□ 3.36
PKD1-230ENST00000565639 NACADO15069 1562 aa35.79■■■■□ 3.32
PKD1-230ENST00000565639 SHROOM4Q9ULL8 1493 aa35.67■■■■□ 3.3
PKD1-230ENST00000565639 RB1CC1Q8TDY2 1594 aa35.48■■■■□ 3.27
PKD1-230ENST00000565639 SCRIBQ14160 1630 aa35.21■■■■□ 3.23
PKD1-230ENST00000565639 UNC13AQ9UPW8 1703 aa34.7■■■■□ 3.15
PKD1-230ENST00000565639 BICRAQ9NZM4 1560 aa34.38■■■■□ 3.09
PKD1-230ENST00000565639 SUPT5HO00267 1087 aaKnown RBP34.31■■■■□ 3.08
PKD1-230ENST00000565639 PABPN1Q86U42 306 aaKnown RBP eCLIP34.17■■■■□ 3.06
PKD1-230ENST00000565639 CECR2Q9BXF3 1484 aa34.11■■■■□ 3.05
PKD1-230ENST00000565639 RSF1Q96T23 1441 aaPredicted RBP34.06■■■■□ 3.04
PKD1-230ENST00000565639 BAZ1AQ9NRL2 1556 aaPredicted RBP33.96■■■■□ 3.03
PKD1-230ENST00000565639 MROH2BQ7Z745 1585 aa33.92■■■■□ 3.02
PKD1-230ENST00000565639 SMARCA4P51532 1647 aa33.8■■■■□ 3
PKD1-230ENST00000565639 WIZO95785 1651 aa33.62■■■□□ 2.97
PKD1-230ENST00000565639 PEG3Q9GZU2 1588 aa33.44■■■□□ 2.94
PKD1-230ENST00000565639 EIF4G1Q04637 1599 aaKnown RBP33.36■■■□□ 2.93
PKD1-230ENST00000565639 TOP2AP11388 1531 aaKnown RBP33.33■■■□□ 2.93
PKD1-230ENST00000565639 SMARCA2P51531 1590 aa33.28■■■□□ 2.92
PKD1-230ENST00000565639 ATAD2BQ9ULI0 1458 aa33.27■■■□□ 2.92
PKD1-230ENST00000565639 BAZ1BQ9UIG0 1483 aaKnown RBP33.07■■■□□ 2.88
PKD1-230ENST00000565639 NCAPD3P42695 1498 aa33.03■■■□□ 2.88
PKD1-230ENST00000565639 HMGXB3Q12766 1538 aa32.98■■■□□ 2.87
PKD1-230ENST00000565639 CCDC88BA6NC98 1476 aa32.96■■■□□ 2.87
PKD1-230ENST00000565639 CC2D2AQ9P2K1 1620 aa32.86■■■□□ 2.85
PKD1-230ENST00000565639 CHIC1Q5VXU3 224 aa32.86■■■□□ 2.85
PKD1-230ENST00000565639 TRIM41Q8WV44 630 aa32.32■■■□□ 2.76
PKD1-230ENST00000565639 CFTRP13569 1480 aa32.26■■■□□ 2.75
PKD1-230ENST00000565639 ABCC8Q09428 1581 aa32.2■■■□□ 2.74
PKD1-230ENST00000565639 CADPSQ9ULU8 1353 aa32.15■■■□□ 2.74
PKD1-230ENST00000565639 PRDM2Q13029 1718 aa32.08■■■□□ 2.73
PKD1-230ENST00000565639 WRNQ14191 1432 aaPredicted RBP eCLIP32.06■■■□□ 2.72
PKD1-230ENST00000565639 DNAJC5BQ9UF47 199 aa32.04■■■□□ 2.72
PKD1-230ENST00000565639 LAMC3Q9Y6N6 1575 aa31.91■■■□□ 2.7
PKD1-230ENST00000565639 SYNJ1O43426 1573 aa31.91■■■□□ 2.7
PKD1-230ENST00000565639 NESP48681 1621 aa31.82■■■□□ 2.69
PKD1-230ENST00000565639 TOP2BQ02880 1626 aa31.82■■■□□ 2.69
PKD1-230ENST00000565639 BIVM-ERCC5R4GMW8 1640 aa31.79■■■□□ 2.68
PKD1-230ENST00000565639 FANCD2Q9BXW9 1451 aa31.78■■■□□ 2.68
PKD1-230ENST00000565639 CUX1P39880 1505 aa31.73■■■□□ 2.67
PKD1-230ENST00000565639 PDS5BQ9NTI5 1447 aa31.66■■■□□ 2.66
PKD1-230ENST00000565639 FAM9AQ8IZU1 332 aaPredicted RBP31.64■■■□□ 2.66
PKD1-230ENST00000565639 EEA1Q15075 1411 aa31.62■■■□□ 2.65
PKD1-230ENST00000565639 CEP164Q9UPV0 1460 aa31.6■■■□□ 2.65
PKD1-230ENST00000565639 SOGA1O94964 1423 aa31.59■■■□□ 2.65
PKD1-230ENST00000565639 LOC105371045A0A1W2PR82 267 aa31.53■■■□□ 2.64
PKD1-230ENST00000565639 DNMBPQ6XZF7 1577 aa31.5■■■□□ 2.63
PKD1-230ENST00000565639 KIF21AQ7Z4S6 1674 aa31.46■■■□□ 2.63
PKD1-230ENST00000565639 RUSC2Q8N2Y8 1516 aa31.46■■■□□ 2.63
PKD1-230ENST00000565639 TOPBP1Q92547 1522 aa31.43■■■□□ 2.62
PKD1-230ENST00000565639 FGD5Q6ZNL6 1462 aa31.4■■■□□ 2.62
PKD1-230ENST00000565639 CSRNP3Q8WYN3 585 aa31.39■■■□□ 2.62
PKD1-230ENST00000565639 URB2Q14146 1524 aaKnown RBP31.38■■■□□ 2.61
PKD1-230ENST00000565639 POLA1P09884 1462 aaPredicted RBP31.27■■■□□ 2.6
PKD1-230ENST00000565639 KIF27Q86VH2 1401 aa31.27■■■□□ 2.6
PKD1-230ENST00000565639 MRC2Q9UBG0 1479 aa31.24■■■□□ 2.59
PKD1-230ENST00000565639 CUX2O14529 1486 aa31.18■■■□□ 2.58
PKD1-230ENST00000565639 KIF21BO75037 1637 aa31.18■■■□□ 2.58
PKD1-230ENST00000565639 ABCA10Q8WWZ4 1543 aa31.16■■■□□ 2.58
PKD1-230ENST00000565639 ERCC6Q03468 1493 aa31.14■■■□□ 2.58
PKD1-230ENST00000565639 GOLGA3Q08378 1498 aa31.13■■■□□ 2.57
PKD1-230ENST00000565639 EHMT2Q96KQ7 1210 aa31.13■■■□□ 2.57
PKD1-230ENST00000565639 RAD54L2Q9Y4B4 1467 aa31.13■■■□□ 2.57
PKD1-230ENST00000565639 WDR62O43379 1518 aa31.09■■■□□ 2.57
PKD1-230ENST00000565639 WDR97A6NE52 1622 aa31.04■■■□□ 2.56
PKD1-230ENST00000565639 PRXQ9BXM0 1461 aa31.04■■■□□ 2.56
PKD1-230ENST00000565639 TNIKQ9UKE5 1360 aa31.03■■■□□ 2.56
PKD1-230ENST00000565639 ERICH3Q5RHP9 1530 aa31■■■□□ 2.55
PKD1-230ENST00000565639 THOC2Q8NI27 1593 aaKnown RBP31■■■□□ 2.55
PKD1-230ENST00000565639 IGF1RP08069 1367 aa30.99■■■□□ 2.55
PKD1-230ENST00000565639 TARBP1Q13395 1621 aaKnown RBP30.97■■■□□ 2.55
PKD1-230ENST00000565639 RAPGEF2Q9Y4G8 1499 aa30.97■■■□□ 2.55
PKD1-230ENST00000565639 UBTFP17480 764 aaKnown RBP30.94■■■□□ 2.54
PKD1-230ENST00000565639 ABCA5Q8WWZ7 1642 aa30.89■■■□□ 2.54
PKD1-230ENST00000565639 IFT140Q96RY7 1462 aa30.86■■■□□ 2.53
PKD1-230ENST00000565639 CARMIL1Q5VZK9 1371 aa30.83■■■□□ 2.53
PKD1-230ENST00000565639 TDRD9Q8NDG6 1382 aaKnown RBP30.83■■■□□ 2.53
PKD1-230ENST00000565639 GAPVD1Q14C86 1478 aa30.83■■■□□ 2.53
PKD1-230ENST00000565639 CEP162Q5TB80 1403 aa30.82■■■□□ 2.52
PKD1-230ENST00000565639 CUL7Q14999 1698 aa30.79■■■□□ 2.52
PKD1-230ENST00000565639 AQRO60306 1485 aaKnown RBP eCLIP30.65■■■□□ 2.52e-9■■■■■ 49.5
PKD1-230ENST00000565639 PBRM1Q86U86 1689 aa30.64■■■□□ 2.5
PKD1-230ENST00000565639 ZNF608Q9ULD9 1512 aaPredicted RBP30.64■■■□□ 2.49
PKD1-230ENST00000565639 GRIN2BQ13224 1484 aa30.61■■■□□ 2.49
PKD1-230ENST00000565639 CLIP1P30622 1438 aa30.61■■■□□ 2.49
PKD1-230ENST00000565639 EIF4G3O43432 1585 aaKnown RBP30.56■■■□□ 2.48
PKD1-230ENST00000565639 FHAD1B1AJZ9 1412 aa30.52■■■□□ 2.48
PKD1-230ENST00000565639 ADAMTS12P58397 1594 aa30.49■■■□□ 2.47
PKD1-230ENST00000565639 CTTNBP2Q8WZ74 1663 aa30.4■■■□□ 2.46
PKD1-230ENST00000565639 SNAPC4Q5SXM2 1469 aa30.39■■■□□ 2.45
PKD1-230ENST00000565639 MAGI1Q96QZ7 1491 aaPredicted RBP30.38■■■□□ 2.45
PKD1-230ENST00000565639 RANGAP1P46060 587 aaPredicted RBP30.37■■■□□ 2.45
PKD1-230ENST00000565639 VPS8Q8N3P4 1428 aa30.35■■■□□ 2.45
PKD1-230ENST00000565639 ARHGAP35Q9NRY4 1499 aa30.33■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms