RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, humanhuman

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-219ENST00000589349 AEBP2Q6ZN18 517 aaPredicted RBP31.11■■■□□ 2.57
DNMT1-219ENST00000589349 CHIC1Q5VXU3 224 aa30.4■■■□□ 2.46
DNMT1-219ENST00000589349 PHF23Q9BUL5 403 aaPredicted RBP26.66■■□□□ 1.86
DNMT1-219ENST00000589349 SENP3Q9H4L4 574 aaPredicted RBP26.54■■□□□ 1.84
DNMT1-219ENST00000589349 PLPPR3Q6T4P5 718 aa24.7■■□□□ 1.54
DNMT1-219ENST00000589349 FOXD1Q16676 465 aa24.56■■□□□ 1.52
DNMT1-219ENST00000589349 ADRA2BP18089 450 aa23.53■■□□□ 1.36
DNMT1-219ENST00000589349 PPP6R1Q9UPN7 881 aa23.52■■□□□ 1.36
DNMT1-219ENST00000589349 PIAS4Q8N2W9 510 aaPredicted RBP23.19■■□□□ 1.3
DNMT1-219ENST00000589349 MSH5O43196 834 aa22.77■■□□□ 1.24
DNMT1-219ENST00000589349 PPP4R3CPQ6ZMV5 832 aa21.72■■□□□ 1.07
DNMT1-219ENST00000589349 SCAF1Q9H7N4 1312 aaKnown RBP21.67■■□□□ 1.06
DNMT1-219ENST00000589349 MAPK8IP2Q13387 824 aaPredicted RBP21.34■■□□□ 1.01
DNMT1-219ENST00000589349 NCBP3Q53F19 620 aaKnown RBP21.21■□□□□ 0.99
DNMT1-219ENST00000589349 CNKSR2Q8WXI2 1034 aa21.16■□□□□ 0.98
DNMT1-219ENST00000589349 DMRT2Q9Y5R5 561 aa21.14■□□□□ 0.97
DNMT1-219ENST00000589349 KCNA4P22459 653 aa21.1■□□□□ 0.97
DNMT1-219ENST00000589349 NPM3O75607 178 aaKnown RBP20.8■□□□□ 0.92
DNMT1-219ENST00000589349 POTEDQ86YR6 584 aa20.77■□□□□ 0.92
DNMT1-219ENST00000589349 RNF216Q9NWF9 866 aaPredicted RBP20.76■□□□□ 0.91
DNMT1-219ENST00000589349 HOXD11P31277 338 aaPredicted RBP20.68■□□□□ 0.9
DNMT1-219ENST00000589349 DNAJC5BQ9UF47 199 aa20.27■□□□□ 0.84
DNMT1-219ENST00000589349 DCAF8L1A6NGE4 600 aa20.24■□□□□ 0.83
DNMT1-219ENST00000589349 SLC4A1APQ9BWU0 796 aaKnown RBP20.14■□□□□ 0.81
DNMT1-219ENST00000589349 NISCHQ9Y2I1 1504 aa19.75■□□□□ 0.75
DNMT1-219ENST00000589349 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.73■□□□□ 0.759e-8■■■■□ 25.4
DNMT1-219ENST00000589349 SLC4A2P04920 1241 aa19.63■□□□□ 0.73
DNMT1-219ENST00000589349 FOXD4L1Q9NU39 408 aa19.5■□□□□ 0.71
DNMT1-219ENST00000589349 EHMT2Q96KQ7 1210 aa19.45■□□□□ 0.7
DNMT1-219ENST00000589349 RNF39Q9H2S5 420 aa19.45■□□□□ 0.7
DNMT1-219ENST00000589349 ZBTB22O15209 634 aa19.37■□□□□ 0.69
DNMT1-219ENST00000589349 U3KPZ7 1027 aaPredicted RBP19.36■□□□□ 0.69
DNMT1-219ENST00000589349 MYCNP04198 464 aaPredicted RBP19.3■□□□□ 0.68
DNMT1-219ENST00000589349 C1QBPQ07021 282 aaKnown RBP19.26■□□□□ 0.67
DNMT1-219ENST00000589349 CSRNP3Q8WYN3 585 aa19.23■□□□□ 0.67
DNMT1-219ENST00000589349 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.21■□□□□ 0.67
DNMT1-219ENST00000589349 HNRNPUL2Q1KMD3 747 aaKnown RBP19.21■□□□□ 0.67
DNMT1-219ENST00000589349 SAMD1Q6SPF0 538 aaPredicted RBP19.11■□□□□ 0.65
DNMT1-219ENST00000589349 APLP2Q06481 763 aa19.06■□□□□ 0.64
DNMT1-219ENST00000589349 CACNB1Q02641 598 aaPredicted RBP19.02■□□□□ 0.64
DNMT1-219ENST00000589349 ATXN8OSP0DMR3 200 aa18.87■□□□□ 0.61
DNMT1-219ENST00000589349 SPINK5Q9NQ38 1064 aaPredicted RBP18.81■□□□□ 0.6
DNMT1-219ENST00000589349 CAPN15O75808 1086 aa18.8■□□□□ 0.6
DNMT1-219ENST00000589349 ZNF219Q9P2Y4 722 aaPredicted RBP18.74■□□□□ 0.59
DNMT1-219ENST00000589349 TRHP20396 242 aaPredicted RBP18.68■□□□□ 0.58
DNMT1-219ENST00000589349 ATF5Q9Y2D1 282 aaPredicted RBP18.66■□□□□ 0.58
DNMT1-219ENST00000589349 DSG3P32926 999 aa18.47■□□□□ 0.55
DNMT1-219ENST00000589349 ABCB7O75027 752 aa18.4■□□□□ 0.54
DNMT1-219ENST00000589349 POLA2Q14181 598 aa18.36■□□□□ 0.53
DNMT1-219ENST00000589349 ZBTB12Q9Y330 459 aaPredicted RBP18.16■□□□□ 0.5
DNMT1-219ENST00000589349 FBLN2P98095 1184 aa18.03■□□□□ 0.48
DNMT1-219ENST00000589349 MKRN4PQ13434 485 aaPredicted RBP17.86■□□□□ 0.45
DNMT1-219ENST00000589349 OSCARQ8IYS5 282 aa17.73■□□□□ 0.43
DNMT1-219ENST00000589349 RBM42Q9BTD8 480 aaKnown RBP17.71■□□□□ 0.43
DNMT1-219ENST00000589349 SPDYE2BA6NHP3 402 aa17.61■□□□□ 0.41
DNMT1-219ENST00000589349 SPDYE6P0CI01 402 aa17.61■□□□□ 0.41
DNMT1-219ENST00000589349 SPDYE2Q495Y8 402 aa17.61■□□□□ 0.41
DNMT1-219ENST00000589349 ABCC9O60706 1549 aa17.6■□□□□ 0.41
DNMT1-219ENST00000589349 CCDC180Q9P1Z9 1646 aa17.55■□□□□ 0.4
DNMT1-219ENST00000589349 SPDYE4A6NLX3 237 aa17.5■□□□□ 0.39
DNMT1-219ENST00000589349 ZNF692Q9BU19 519 aaPredicted RBP17.5■□□□□ 0.39
DNMT1-219ENST00000589349 FKBP8Q14318 412 aa17.43■□□□□ 0.38
DNMT1-219ENST00000589349 AKT1S1Q96B36 256 aa17.43■□□□□ 0.38
DNMT1-219ENST00000589349 SSUH2Q9Y2M2 353 aa17.43■□□□□ 0.38
DNMT1-219ENST00000589349 PABPN1Q86U42 306 aaKnown RBP eCLIP17.26■□□□□ 0.35
DNMT1-219ENST00000589349 REM2Q8IYK8 340 aaPredicted RBP17.22■□□□□ 0.35
DNMT1-219ENST00000589349 PROM2Q8N271 834 aa17.18■□□□□ 0.34
DNMT1-219ENST00000589349 SPDYE1Q8NFV5 336 aaPredicted RBP17.12■□□□□ 0.33
DNMT1-219ENST00000589349 STAG3Q9UJ98 1225 aa17.04■□□□□ 0.32
DNMT1-219ENST00000589349 PITPNM1O00562 1244 aa17.02■□□□□ 0.32
DNMT1-219ENST00000589349 CLEC11AQ9Y240 323 aa17■□□□□ 0.31
DNMT1-219ENST00000589349 DCAF8L2P0C7V8 631 aa16.99■□□□□ 0.31
DNMT1-219ENST00000589349 CHRDL2Q6WN34 429 aa16.93■□□□□ 0.3
DNMT1-219ENST00000589349 FBXO3Q9UK99 471 aa16.92■□□□□ 0.3
DNMT1-219ENST00000589349 PRR29P0C7W0 189 aa16.86■□□□□ 0.29
DNMT1-219ENST00000589349 RB1CC1Q8TDY2 1594 aa16.73■□□□□ 0.27
DNMT1-219ENST00000589349 FXR2P51116 673 aaKnown RBP eCLIP16.72■□□□□ 0.272e-8■■□□□ 14.5
DNMT1-219ENST00000589349 PIP4P2Q8N4L2 257 aa16.67■□□□□ 0.26
DNMT1-219ENST00000589349 PLEKHG5O94827 1062 aa16.63■□□□□ 0.25
DNMT1-219ENST00000589349 VASPP50552 380 aaPredicted RBP16.63■□□□□ 0.25
DNMT1-219ENST00000589349 NACADO15069 1562 aa16.62■□□□□ 0.25
DNMT1-219ENST00000589349 MIER1Q8N108 512 aa16.61■□□□□ 0.25
DNMT1-219ENST00000589349 PLCD3Q8N3E9 789 aa16.61■□□□□ 0.25
DNMT1-219ENST00000589349 PRKAR2AP13861 404 aaKnown RBP16.6■□□□□ 0.25
DNMT1-219ENST00000589349 CREBZFQ9NS37 354 aa16.58■□□□□ 0.24
DNMT1-219ENST00000589349 CHADLQ6NUI6 762 aa16.54■□□□□ 0.24
DNMT1-219ENST00000589349 ZBTB47Q9UFB7 747 aaPredicted RBP16.48■□□□□ 0.23
DNMT1-219ENST00000589349 POTEHQ6S545 545 aa16.46■□□□□ 0.23
DNMT1-219ENST00000589349 FARP1Q9Y4F1 1045 aaPredicted RBP16.43■□□□□ 0.22
DNMT1-219ENST00000589349 NPM1P06748 294 aaKnown RBP eCLIP16.4■□□□□ 0.22
DNMT1-219ENST00000589349 KLHL34Q8N239 644 aa16.38■□□□□ 0.21
DNMT1-219ENST00000589349 ZCCHC6Q5VYS8 1495 aaKnown RBP16.37■□□□□ 0.21
DNMT1-219ENST00000589349 MNX1P50219 401 aaPredicted RBP16.37■□□□□ 0.21
DNMT1-219ENST00000589349 IFNLR1Q8IU57 520 aaPredicted RBP16.34■□□□□ 0.21
DNMT1-219ENST00000589349 MYO15BQ96JP2 1530 aa16.34■□□□□ 0.21
DNMT1-219ENST00000589349 UNC13AQ9UPW8 1703 aa16.24■□□□□ 0.19
DNMT1-219ENST00000589349 SPOCK2Q92563 424 aa16.23■□□□□ 0.19
DNMT1-219ENST00000589349 DCAF1Q9Y4B6 1507 aa16.22■□□□□ 0.19
DNMT1-219ENST00000589349 HAX1O00165 279 aa16.18■□□□□ 0.18
DNMT1-219ENST00000589349 SCRIBQ14160 1630 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms