RNA–Protein interactions for RNA: ENST00000584582.5

TOP3A-217, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 3,661 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-217ENST00000584582 NISCHQ9Y2I1 1504 aa22.19■■□□□ 1.14
TOP3A-217ENST00000584582 DCAF8L2P0C7V8 631 aa20.49■□□□□ 0.87
TOP3A-217ENST00000584582 SHROOM4Q9ULL8 1493 aa20.23■□□□□ 0.83
TOP3A-217ENST00000584582 SUPT5HO00267 1087 aaKnown RBP19.97■□□□□ 0.79
TOP3A-217ENST00000584582 EHMT2Q96KQ7 1210 aa18.97■□□□□ 0.63
TOP3A-217ENST00000584582 FAM9AQ8IZU1 332 aaPredicted RBP18.68■□□□□ 0.58
TOP3A-217ENST00000584582 CHIC1Q5VXU3 224 aa18.58■□□□□ 0.56
TOP3A-217ENST00000584582 ZCCHC6Q5VYS8 1495 aaKnown RBP18.56■□□□□ 0.56
TOP3A-217ENST00000584582 PCGF6Q9BYE7 350 aa18.49■□□□□ 0.55
TOP3A-217ENST00000584582 ABCC9O60706 1549 aa18.48■□□□□ 0.55
TOP3A-217ENST00000584582 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
TOP3A-217ENST00000584582 TRIM41Q8WV44 630 aa18.33■□□□□ 0.52
TOP3A-217ENST00000584582 CCDC180Q9P1Z9 1646 aa18.31■□□□□ 0.52
TOP3A-217ENST00000584582 TTBK1Q5TCY1 1321 aaPredicted RBP18.23■□□□□ 0.51
TOP3A-217ENST00000584582 PPARGC1BQ86YN6 1023 aaKnown RBP18.17■□□□□ 0.5
TOP3A-217ENST00000584582 PABPN1Q86U42 306 aaKnown RBP eCLIP18.1■□□□□ 0.49
TOP3A-217ENST00000584582 SCRIBQ14160 1630 aa18.08■□□□□ 0.48
TOP3A-217ENST00000584582 MYO15BQ96JP2 1530 aa18.04■□□□□ 0.48
TOP3A-217ENST00000584582 RANGAP1P46060 587 aaPredicted RBP17.99■□□□□ 0.47
TOP3A-217ENST00000584582 HRCP23327 699 aa17.79■□□□□ 0.44
TOP3A-217ENST00000584582 UBTFP17480 764 aaKnown RBP17.75■□□□□ 0.43
TOP3A-217ENST00000584582 RSF1Q96T23 1441 aaPredicted RBP17.74■□□□□ 0.43
TOP3A-217ENST00000584582 TRIM26Q12899 539 aaPredicted RBP17.69■□□□□ 0.42
TOP3A-217ENST00000584582 CECR2Q9BXF3 1484 aa17.67■□□□□ 0.42
TOP3A-217ENST00000584582 DCAF1Q9Y4B6 1507 aa17.64■□□□□ 0.41
TOP3A-217ENST00000584582 CCER1Q8TC90 406 aaPredicted RBP17.51■□□□□ 0.39
TOP3A-217ENST00000584582 APLP2Q06481 763 aa17.45■□□□□ 0.38
TOP3A-217ENST00000584582 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.45■□□□□ 0.38
TOP3A-217ENST00000584582 RB1CC1Q8TDY2 1594 aa17.43■□□□□ 0.38
TOP3A-217ENST00000584582 MROH2BQ7Z745 1585 aa17.41■□□□□ 0.38
TOP3A-217ENST00000584582 NACADO15069 1562 aa17.38■□□□□ 0.37
TOP3A-217ENST00000584582 ATP1B4Q9UN42 357 aaPredicted RBP17.32■□□□□ 0.36
TOP3A-217ENST00000584582 HNRNPUL2Q1KMD3 747 aaKnown RBP17.31■□□□□ 0.36
TOP3A-217ENST00000584582 CSRNP3Q8WYN3 585 aa17.24■□□□□ 0.35
TOP3A-217ENST00000584582 WIZO95785 1651 aa17.23■□□□□ 0.35
TOP3A-217ENST00000584582 ZEB1P37275 1124 aaPredicted RBP17.23■□□□□ 0.35
TOP3A-217ENST00000584582 ITGAEP38570 1179 aa17.19■□□□□ 0.34
TOP3A-217ENST00000584582 ABCC8Q09428 1581 aa17.1■□□□□ 0.33
TOP3A-217ENST00000584582 BAZ1AQ9NRL2 1556 aaPredicted RBP17.08■□□□□ 0.33
TOP3A-217ENST00000584582 SOGA1O94964 1423 aa17.06■□□□□ 0.32
TOP3A-217ENST00000584582 CCDC88BA6NC98 1476 aa17.05■□□□□ 0.32
TOP3A-217ENST00000584582 YTHDC1Q96MU7 727 aaKnown RBP17.01■□□□□ 0.31
TOP3A-217ENST00000584582 P3H3Q8IVL6 736 aa16.97■□□□□ 0.31
TOP3A-217ENST00000584582 WRNQ14191 1432 aaPredicted RBP eCLIP16.91■□□□□ 0.3
TOP3A-217ENST00000584582 RUSC2Q8N2Y8 1516 aa16.89■□□□□ 0.29
TOP3A-217ENST00000584582 CEP162Q5TB80 1403 aa16.89■□□□□ 0.29
TOP3A-217ENST00000584582 BAZ1BQ9UIG0 1483 aaKnown RBP16.88■□□□□ 0.29
TOP3A-217ENST00000584582 SMARCA4P51532 1647 aa16.82■□□□□ 0.28
TOP3A-217ENST00000584582 DIEXFQ68CQ4 756 aaKnown RBP16.81■□□□□ 0.28
TOP3A-217ENST00000584582 TOP2AP11388 1531 aaKnown RBP16.79■□□□□ 0.28
TOP3A-217ENST00000584582 ARID3CA6NKF2 412 aa16.75■□□□□ 0.27
TOP3A-217ENST00000584582 FAM50AQ14320 339 aaKnown RBP16.75■□□□□ 0.27
TOP3A-217ENST00000584582 CLIP1P30622 1438 aa16.74■□□□□ 0.27
TOP3A-217ENST00000584582 TNIKQ9UKE5 1360 aa16.71■□□□□ 0.26
TOP3A-217ENST00000584582 SMARCA2P51531 1590 aa16.69■□□□□ 0.26
TOP3A-217ENST00000584582 ATAD2BQ9ULI0 1458 aa16.69■□□□□ 0.26
TOP3A-217ENST00000584582 GOLGA3Q08378 1498 aa16.68■□□□□ 0.26
TOP3A-217ENST00000584582 CENPBP07199 599 aaPredicted RBP16.64■□□□□ 0.25
TOP3A-217ENST00000584582 NEUROD1Q13562 356 aa16.63■□□□□ 0.25
TOP3A-217ENST00000584582 EEA1Q15075 1411 aa16.58■□□□□ 0.25
TOP3A-217ENST00000584582 CEP164Q9UPV0 1460 aa16.55■□□□□ 0.24
TOP3A-217ENST00000584582 ZNF316A6NFI3 1004 aaPredicted RBP16.55■□□□□ 0.24
TOP3A-217ENST00000584582 KANK4Q5T7N3 995 aaPredicted RBP16.55■□□□□ 0.24
TOP3A-217ENST00000584582 RAPGEF2Q9Y4G8 1499 aa16.54■□□□□ 0.24
TOP3A-217ENST00000584582 BICRAQ9NZM4 1560 aa16.53■□□□□ 0.24
TOP3A-217ENST00000584582 FBLN2P98095 1184 aa16.53■□□□□ 0.24
TOP3A-217ENST00000584582 CNGB1Q14028 1251 aaPredicted RBP16.47■□□□□ 0.23
TOP3A-217ENST00000584582 UNC13AQ9UPW8 1703 aa16.46■□□□□ 0.23
TOP3A-217ENST00000584582 KIF27Q86VH2 1401 aa16.46■□□□□ 0.22
TOP3A-217ENST00000584582 GTF3C3Q9Y5Q9 886 aa16.44■□□□□ 0.22
TOP3A-217ENST00000584582 CUX2O14529 1486 aa16.43■□□□□ 0.22
TOP3A-217ENST00000584582 SYNJ1O43426 1573 aa16.41■□□□□ 0.22
TOP3A-217ENST00000584582 HIRIP3Q9BW71 556 aaPredicted RBP16.41■□□□□ 0.22
TOP3A-217ENST00000584582 SCAF1Q9H7N4 1312 aaKnown RBP16.39■□□□□ 0.21
TOP3A-217ENST00000584582 MIER1Q8N108 512 aa16.39■□□□□ 0.21
TOP3A-217ENST00000584582 DNAJC5BQ9UF47 199 aa16.37■□□□□ 0.21
TOP3A-217ENST00000584582 VPS8Q8N3P4 1428 aa16.37■□□□□ 0.21
TOP3A-217ENST00000584582 TRIM52Q96A61 297 aa16.36■□□□□ 0.21
TOP3A-217ENST00000584582 CHIC2Q9UKJ5 165 aa16.35■□□□□ 0.21
TOP3A-217ENST00000584582 ACIN1Q9UKV3 1341 aaKnown RBP16.34■□□□□ 0.21
TOP3A-217ENST00000584582 CARMIL1Q5VZK9 1371 aa16.34■□□□□ 0.21
TOP3A-217ENST00000584582 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
TOP3A-217ENST00000584582 TDRD9Q8NDG6 1382 aaKnown RBP16.31■□□□□ 0.2
TOP3A-217ENST00000584582 POLR3GLQ9BT43 218 aa16.31■□□□□ 0.2
TOP3A-217ENST00000584582 CADPSQ9ULU8 1353 aa16.3■□□□□ 0.2
TOP3A-217ENST00000584582 SIN3AQ96ST3 1273 aa16.27■□□□□ 0.19
TOP3A-217ENST00000584582 ZNF777Q9ULD5 760 aaPredicted RBP16.24■□□□□ 0.19
TOP3A-217ENST00000584582 NCAPD3P42695 1498 aa16.24■□□□□ 0.19
TOP3A-217ENST00000584582 DDX10Q13206 875 aaKnown RBP16.21■□□□□ 0.19
TOP3A-217ENST00000584582 RRP7BPQ9NSQ0 103 aa16.21■□□□□ 0.18
TOP3A-217ENST00000584582 MTUS2Q5JR59 1369 aa16.19■□□□□ 0.18
TOP3A-217ENST00000584582 IGF1RP08069 1367 aa16.18■□□□□ 0.18
TOP3A-217ENST00000584582 ZNF326Q5BKZ1 582 aaKnown RBP16.18■□□□□ 0.18
TOP3A-217ENST00000584582 RAD54L2Q9Y4B4 1467 aa16.18■□□□□ 0.18
TOP3A-217ENST00000584582 NESP48681 1621 aa16.18■□□□□ 0.18
TOP3A-217ENST00000584582 CCNB3Q8WWL7 1395 aa16.17■□□□□ 0.18
TOP3A-217ENST00000584582 FHOD3Q2V2M9 1422 aa16.14■□□□□ 0.18
TOP3A-217ENST00000584582 CUX1P39880 1505 aa16.14■□□□□ 0.17
TOP3A-217ENST00000584582 BCANQ96GW7 911 aa16.14■□□□□ 0.17
TOP3A-217ENST00000584582 KIF21BO75037 1637 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms