RNA–Protein interactions for RNA: ENST00000591764.1

DNMT1-224, Transcript of DNA methyltransferase 1, humanhuman

TSL 1 (best)

Gene DNMT1, Length 341 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-224ENST00000591764 AEBP2Q6ZN18 517 aaPredicted RBP28.99■■■□□ 2.23
DNMT1-224ENST00000591764 CHIC1Q5VXU3 224 aa27.55■■■□□ 2
DNMT1-224ENST00000591764 SENP3Q9H4L4 574 aaPredicted RBP24.58■■□□□ 1.53
DNMT1-224ENST00000591764 PHF23Q9BUL5 403 aaPredicted RBP24.34■■□□□ 1.49
DNMT1-224ENST00000591764 FOXD1Q16676 465 aa22.98■■□□□ 1.27
DNMT1-224ENST00000591764 PLPPR3Q6T4P5 718 aa22.01■■□□□ 1.11
DNMT1-224ENST00000591764 PPP6R1Q9UPN7 881 aa21.61■■□□□ 1.05
DNMT1-224ENST00000591764 ADRA2BP18089 450 aa21.54■■□□□ 1.04
DNMT1-224ENST00000591764 PIAS4Q8N2W9 510 aaPredicted RBP21.46■■□□□ 1.03
DNMT1-224ENST00000591764 MSH5O43196 834 aa21.36■■□□□ 1.01
DNMT1-224ENST00000591764 POTEDQ86YR6 584 aa20.77■□□□□ 0.92
DNMT1-224ENST00000591764 NISCHQ9Y2I1 1504 aa20.63■□□□□ 0.89
DNMT1-224ENST00000591764 MAPK8IP2Q13387 824 aaPredicted RBP19.77■□□□□ 0.76
DNMT1-224ENST00000591764 SCAF1Q9H7N4 1312 aaKnown RBP19.55■□□□□ 0.72
DNMT1-224ENST00000591764 DMRT2Q9Y5R5 561 aa19.54■□□□□ 0.72
DNMT1-224ENST00000591764 PPP4R3CPQ6ZMV5 832 aa19.36■□□□□ 0.69
DNMT1-224ENST00000591764 CNKSR2Q8WXI2 1034 aa18.93■□□□□ 0.62
DNMT1-224ENST00000591764 HOXD11P31277 338 aaPredicted RBP18.86■□□□□ 0.61
DNMT1-224ENST00000591764 ABCC9O60706 1549 aa18.74■□□□□ 0.59
DNMT1-224ENST00000591764 DCAF8L1A6NGE4 600 aa18.74■□□□□ 0.59
DNMT1-224ENST00000591764 RNF216Q9NWF9 866 aaPredicted RBP18.73■□□□□ 0.59
DNMT1-224ENST00000591764 CCDC180Q9P1Z9 1646 aa18.67■□□□□ 0.58
DNMT1-224ENST00000591764 NCBP3Q53F19 620 aaKnown RBP18.56■□□□□ 0.56
DNMT1-224ENST00000591764 NPM3O75607 178 aaKnown RBP18.39■□□□□ 0.53
DNMT1-224ENST00000591764 CACNB1Q02641 598 aaPredicted RBP18.32■□□□□ 0.52
DNMT1-224ENST00000591764 RNF39Q9H2S5 420 aa18.3■□□□□ 0.52
DNMT1-224ENST00000591764 KCNA4P22459 653 aa18.16■□□□□ 0.5
DNMT1-224ENST00000591764 DNAJC5BQ9UF47 199 aa18.11■□□□□ 0.49
DNMT1-224ENST00000591764 C1QBPQ07021 282 aaKnown RBP17.98■□□□□ 0.47
DNMT1-224ENST00000591764 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.471e-7■■■■□ 26
DNMT1-224ENST00000591764 RB1CC1Q8TDY2 1594 aa17.86■□□□□ 0.45
DNMT1-224ENST00000591764 NACADO15069 1562 aa17.68■□□□□ 0.42
DNMT1-224ENST00000591764 U3KPZ7 1027 aaPredicted RBP17.65■□□□□ 0.42
DNMT1-224ENST00000591764 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
DNMT1-224ENST00000591764 DCAF8L2P0C7V8 631 aa17.49■□□□□ 0.39
DNMT1-224ENST00000591764 SPINK5Q9NQ38 1064 aaPredicted RBP17.39■□□□□ 0.37
DNMT1-224ENST00000591764 MYO15BQ96JP2 1530 aa17.38■□□□□ 0.37
DNMT1-224ENST00000591764 PABPN1Q86U42 306 aaKnown RBP eCLIP17.38■□□□□ 0.37
DNMT1-224ENST00000591764 UNC13AQ9UPW8 1703 aa17.36■□□□□ 0.37
DNMT1-224ENST00000591764 CAPN15O75808 1086 aa17.29■□□□□ 0.36
DNMT1-224ENST00000591764 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
DNMT1-224ENST00000591764 DSG3P32926 999 aa17.19■□□□□ 0.34
DNMT1-224ENST00000591764 SHROOM4Q9ULL8 1493 aa17.14■□□□□ 0.33
DNMT1-224ENST00000591764 SLC4A1APQ9BWU0 796 aaKnown RBP17.12■□□□□ 0.33
DNMT1-224ENST00000591764 DCAF1Q9Y4B6 1507 aa17.08■□□□□ 0.32
DNMT1-224ENST00000591764 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.32
DNMT1-224ENST00000591764 TRHP20396 242 aaPredicted RBP17.05■□□□□ 0.32
DNMT1-224ENST00000591764 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
DNMT1-224ENST00000591764 HNRNPUL2Q1KMD3 747 aaKnown RBP17.04■□□□□ 0.32
DNMT1-224ENST00000591764 APLP2Q06481 763 aa17.01■□□□□ 0.31
DNMT1-224ENST00000591764 SAMD1Q6SPF0 538 aaPredicted RBP16.99■□□□□ 0.31
DNMT1-224ENST00000591764 MYCNP04198 464 aaPredicted RBP16.96■□□□□ 0.31
DNMT1-224ENST00000591764 ZNF219Q9P2Y4 722 aaPredicted RBP16.96■□□□□ 0.31
DNMT1-224ENST00000591764 ABCB7O75027 752 aa16.95■□□□□ 0.3
DNMT1-224ENST00000591764 CC2D2AQ9P2K1 1620 aa16.95■□□□□ 0.3
DNMT1-224ENST00000591764 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
DNMT1-224ENST00000591764 SCRIBQ14160 1630 aa16.94■□□□□ 0.3
DNMT1-224ENST00000591764 EIF4G1Q04637 1599 aaKnown RBP16.88■□□□□ 0.29
DNMT1-224ENST00000591764 FOXD4L1Q9NU39 408 aa16.86■□□□□ 0.29
DNMT1-224ENST00000591764 ZBTB22O15209 634 aa16.74■□□□□ 0.27
DNMT1-224ENST00000591764 ATF5Q9Y2D1 282 aaPredicted RBP16.66■□□□□ 0.26
DNMT1-224ENST00000591764 POLA2Q14181 598 aa16.61■□□□□ 0.25
DNMT1-224ENST00000591764 DNAJC5Q9H3Z4 198 aa16.41■□□□□ 0.22
DNMT1-224ENST00000591764 CUX2O14529 1486 aa16.31■□□□□ 0.2
DNMT1-224ENST00000591764 RBM42Q9BTD8 480 aaKnown RBP16.3■□□□□ 0.2
DNMT1-224ENST00000591764 ERCC6Q03468 1493 aa16.29■□□□□ 0.2
DNMT1-224ENST00000591764 ATXN8OSP0DMR3 200 aa16.28■□□□□ 0.2
DNMT1-224ENST00000591764 NCAPD3P42695 1498 aa16.28■□□□□ 0.2
DNMT1-224ENST00000591764 POTEHQ6S545 545 aa16.27■□□□□ 0.2
DNMT1-224ENST00000591764 SMARCA2P51531 1590 aa16.21■□□□□ 0.19
DNMT1-224ENST00000591764 ATAD2BQ9ULI0 1458 aa16.19■□□□□ 0.18
DNMT1-224ENST00000591764 ZBTB12Q9Y330 459 aaPredicted RBP16.19■□□□□ 0.18
DNMT1-224ENST00000591764 HMGXB3Q12766 1538 aa16.19■□□□□ 0.18
DNMT1-224ENST00000591764 SMARCA4P51532 1647 aa16.15■□□□□ 0.18
DNMT1-224ENST00000591764 OSCARQ8IYS5 282 aa16.11■□□□□ 0.17
DNMT1-224ENST00000591764 BAZ1AQ9NRL2 1556 aaPredicted RBP16.09■□□□□ 0.17
DNMT1-224ENST00000591764 BAZ1BQ9UIG0 1483 aaKnown RBP16.08■□□□□ 0.16
DNMT1-224ENST00000591764 CSRNP3Q8WYN3 585 aa16.02■□□□□ 0.16
DNMT1-224ENST00000591764 NESP48681 1621 aa16.01■□□□□ 0.15
DNMT1-224ENST00000591764 PEG3Q9GZU2 1588 aa16■□□□□ 0.15
DNMT1-224ENST00000591764 AKT1S1Q96B36 256 aa15.99■□□□□ 0.15
DNMT1-224ENST00000591764 LAMC3Q9Y6N6 1575 aa15.99■□□□□ 0.15
DNMT1-224ENST00000591764 CHRDL2Q6WN34 429 aa15.97■□□□□ 0.15
DNMT1-224ENST00000591764 THOC2Q8NI27 1593 aaKnown RBP15.95■□□□□ 0.14
DNMT1-224ENST00000591764 PDS5BQ9NTI5 1447 aa15.92■□□□□ 0.14
DNMT1-224ENST00000591764 MKRN4PQ13434 485 aaPredicted RBP15.89■□□□□ 0.13
DNMT1-224ENST00000591764 REM2Q8IYK8 340 aaPredicted RBP15.88■□□□□ 0.13
DNMT1-224ENST00000591764 EHMT2Q96KQ7 1210 aa15.88■□□□□ 0.13
DNMT1-224ENST00000591764 FBLN2P98095 1184 aa15.86■□□□□ 0.13
DNMT1-224ENST00000591764 MROH2BQ7Z745 1585 aa15.86■□□□□ 0.13
DNMT1-224ENST00000591764 KIF21AQ7Z4S6 1674 aa15.85■□□□□ 0.13
DNMT1-224ENST00000591764 CADPSQ9ULU8 1353 aa15.78■□□□□ 0.12
DNMT1-224ENST00000591764 MRC2Q9UBG0 1479 aa15.76■□□□□ 0.11
DNMT1-224ENST00000591764 SPDYE2BA6NHP3 402 aa15.75■□□□□ 0.11
DNMT1-224ENST00000591764 SPDYE6P0CI01 402 aa15.75■□□□□ 0.11
DNMT1-224ENST00000591764 SPDYE2Q495Y8 402 aa15.75■□□□□ 0.11
DNMT1-224ENST00000591764 PITPNM1O00562 1244 aa15.73■□□□□ 0.11
DNMT1-224ENST00000591764 WDR62O43379 1518 aa15.71■□□□□ 0.11
DNMT1-224ENST00000591764 CEP164Q9UPV0 1460 aa15.68■□□□□ 0.1
DNMT1-224ENST00000591764 WIZO95785 1651 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms