RNA–Protein interactions for RNA: ENST00000444502.5

TOP3B-210, Transcript of DNA topoisomerase III beta, humanhuman

TSL 2

Gene TOP3B, Length 4,163 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3B-210ENST00000444502 NISCHQ9Y2I1 1504 aa20.23■□□□□ 0.83
TOP3B-210ENST00000444502 DCAF8L2P0C7V8 631 aa19.48■□□□□ 0.71
TOP3B-210ENST00000444502 SHROOM4Q9ULL8 1493 aa18.37■□□□□ 0.53
TOP3B-210ENST00000444502 SUPT5HO00267 1087 aaKnown RBP18.23■□□□□ 0.51
TOP3B-210ENST00000444502 EHMT2Q96KQ7 1210 aa17.52■□□□□ 0.39
TOP3B-210ENST00000444502 ABCC9O60706 1549 aa17.2■□□□□ 0.34
TOP3B-210ENST00000444502 FAM9AQ8IZU1 332 aaPredicted RBP17.15■□□□□ 0.34
TOP3B-210ENST00000444502 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
TOP3B-210ENST00000444502 CHIC1Q5VXU3 224 aa16.98■□□□□ 0.31
TOP3B-210ENST00000444502 PCGF6Q9BYE7 350 aa16.92■□□□□ 0.3
TOP3B-210ENST00000444502 ZCCHC6Q5VYS8 1495 aaKnown RBP16.91■□□□□ 0.3
TOP3B-210ENST00000444502 PABPN1Q86U42 306 aaKnown RBP eCLIP16.91■□□□□ 0.3
TOP3B-210ENST00000444502 RANGAP1P46060 587 aaPredicted RBP16.83■□□□□ 0.28
TOP3B-210ENST00000444502 TRIM41Q8WV44 630 aa16.83■□□□□ 0.28
TOP3B-210ENST00000444502 LOC105371045A0A1W2PR82 267 aa16.79■□□□□ 0.28
TOP3B-210ENST00000444502 TTBK1Q5TCY1 1321 aaPredicted RBP16.77■□□□□ 0.28
TOP3B-210ENST00000444502 CCDC180Q9P1Z9 1646 aa16.75■□□□□ 0.27
TOP3B-210ENST00000444502 HRCP23327 699 aa16.62■□□□□ 0.25
TOP3B-210ENST00000444502 PPARGC1BQ86YN6 1023 aaKnown RBP16.6■□□□□ 0.25
TOP3B-210ENST00000444502 APLP2Q06481 763 aa16.56■□□□□ 0.24
TOP3B-210ENST00000444502 UBTFP17480 764 aaKnown RBP16.51■□□□□ 0.23
TOP3B-210ENST00000444502 MYT1Q01538 1121 aa16.51■□□□□ 0.23
TOP3B-210ENST00000444502 ATP1B4Q9UN42 357 aaPredicted RBP16.46■□□□□ 0.23
TOP3B-210ENST00000444502 SCRIBQ14160 1630 aa16.42■□□□□ 0.22
TOP3B-210ENST00000444502 TRIM26Q12899 539 aaPredicted RBP16.31■□□□□ 0.2
TOP3B-210ENST00000444502 MYO15BQ96JP2 1530 aa16.31■□□□□ 0.2
TOP3B-210ENST00000444502 DCAF1Q9Y4B6 1507 aa16.16■□□□□ 0.18
TOP3B-210ENST00000444502 RSF1Q96T23 1441 aaPredicted RBP16.15■□□□□ 0.18
TOP3B-210ENST00000444502 CCER1Q8TC90 406 aaPredicted RBP16.14■□□□□ 0.17
TOP3B-210ENST00000444502 ZEB1P37275 1124 aaPredicted RBP16.07■□□□□ 0.16
TOP3B-210ENST00000444502 SCAF1Q9H7N4 1312 aaKnown RBP16.05■□□□□ 0.16
TOP3B-210ENST00000444502 CECR2Q9BXF3 1484 aa15.99■□□□□ 0.15
TOP3B-210ENST00000444502 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.99■□□□□ 0.15
TOP3B-210ENST00000444502 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
TOP3B-210ENST00000444502 ITGAEP38570 1179 aa15.94■□□□□ 0.14
TOP3B-210ENST00000444502 NACADO15069 1562 aa15.93■□□□□ 0.14
TOP3B-210ENST00000444502 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
TOP3B-210ENST00000444502 FBLN2P98095 1184 aa15.88■□□□□ 0.13
TOP3B-210ENST00000444502 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
TOP3B-210ENST00000444502 MROH2BQ7Z745 1585 aa15.79■□□□□ 0.12
TOP3B-210ENST00000444502 CENPBP07199 599 aaPredicted RBP15.76■□□□□ 0.11
TOP3B-210ENST00000444502 GTF3C3Q9Y5Q9 886 aa15.75■□□□□ 0.11
TOP3B-210ENST00000444502 MYT1LQ9UL68 1186 aa15.72■□□□□ 0.11
TOP3B-210ENST00000444502 P3H3Q8IVL6 736 aa15.71■□□□□ 0.11
TOP3B-210ENST00000444502 ARID3CA6NKF2 412 aa15.68■□□□□ 0.1
TOP3B-210ENST00000444502 BAZ1AQ9NRL2 1556 aaPredicted RBP15.64■□□□□ 0.09
TOP3B-210ENST00000444502 YTHDC1Q96MU7 727 aaKnown RBP15.63■□□□□ 0.09
TOP3B-210ENST00000444502 WIZO95785 1651 aa15.61■□□□□ 0.09
TOP3B-210ENST00000444502 ACIN1Q9UKV3 1341 aaKnown RBP15.6■□□□□ 0.09
TOP3B-210ENST00000444502 NEUROD1Q13562 356 aa15.57■□□□□ 0.08
TOP3B-210ENST00000444502 FAM50AQ14320 339 aaKnown RBP15.54■□□□□ 0.08
TOP3B-210ENST00000444502 CCDC88BA6NC98 1476 aa15.52■□□□□ 0.07
TOP3B-210ENST00000444502 ABCC8Q09428 1581 aa15.5■□□□□ 0.07
TOP3B-210ENST00000444502 SOGA1O94964 1423 aa15.49■□□□□ 0.07
TOP3B-210ENST00000444502 BAZ1BQ9UIG0 1483 aaKnown RBP15.49■□□□□ 0.07
TOP3B-210ENST00000444502 DIEXFQ68CQ4 756 aaKnown RBP15.48■□□□□ 0.07
TOP3B-210ENST00000444502 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.07
TOP3B-210ENST00000444502 CEP162Q5TB80 1403 aa15.44■□□□□ 0.06
TOP3B-210ENST00000444502 BCL11AQ9H165 835 aa15.43■□□□□ 0.06
TOP3B-210ENST00000444502 POLR3GLQ9BT43 218 aa15.36■□□□□ 0.05
TOP3B-210ENST00000444502 CNGB1Q14028 1251 aaPredicted RBP15.36■□□□□ 0.05
TOP3B-210ENST00000444502 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
TOP3B-210ENST00000444502 CLIP1P30622 1438 aa15.35■□□□□ 0.05
TOP3B-210ENST00000444502 TOP2AP11388 1531 aaKnown RBP15.34■□□□□ 0.05
TOP3B-210ENST00000444502 EEA1Q15075 1411 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 GOLGA3Q08378 1498 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 SMARCA4P51532 1647 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 TRIM52Q96A61 297 aa15.32■□□□□ 0.04
TOP3B-210ENST00000444502 ZNF777Q9ULD5 760 aaPredicted RBP15.29■□□□□ 0.04
TOP3B-210ENST00000444502 CHMP7Q8WUX9 453 aaPredicted RBP15.28■□□□□ 0.04
TOP3B-210ENST00000444502 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
TOP3B-210ENST00000444502 ZNF316A6NFI3 1004 aaPredicted RBP15.27■□□□□ 0.03
TOP3B-210ENST00000444502 CEP164Q9UPV0 1460 aa15.21■□□□□ 0.03
TOP3B-210ENST00000444502 ATAD2BQ9ULI0 1458 aa15.2■□□□□ 0.02
TOP3B-210ENST00000444502 SMARCA2P51531 1590 aa15.18■□□□□ 0.02
TOP3B-210ENST00000444502 ERCC6Q03468 1493 aa15.18■□□□□ 0.02
TOP3B-210ENST00000444502 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
TOP3B-210ENST00000444502 KIF27Q86VH2 1401 aa15.12■□□□□ 0.01
TOP3B-210ENST00000444502 CDK11AQ9UQ88 783 aaPredicted RBP15.11■□□□□ 0.01
TOP3B-210ENST00000444502 CHIC2Q9UKJ5 165 aa15.08■□□□□ 0
TOP3B-210ENST00000444502 PRKCSHP14314 528 aaPredicted RBP15.07■□□□□ 0
TOP3B-210ENST00000444502 NPM1P06748 294 aaKnown RBP eCLIP15.06■□□□□ 0
TOP3B-210ENST00000444502 ERICH6Q7L0X2 663 aa15.05■□□□□ -0
TOP3B-210ENST00000444502 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
TOP3B-210ENST00000444502 KANK4Q5T7N3 995 aaPredicted RBP15.04■□□□□ -0
TOP3B-210ENST00000444502 RAPGEF2Q9Y4G8 1499 aa15.04■□□□□ -0
TOP3B-210ENST00000444502 ANP32EQ9BTT0 268 aa15.03■□□□□ -0
TOP3B-210ENST00000444502 KCNH8Q96L42 1107 aa15.02■□□□□ -0
TOP3B-210ENST00000444502 CUX2O14529 1486 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 VPS8Q8N3P4 1428 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 PLPPR3Q6T4P5 718 aa15.01□□□□□ -0.01
TOP3B-210ENST00000444502 TDRD9Q8NDG6 1382 aaKnown RBP15.01□□□□□ -0.01
TOP3B-210ENST00000444502 MIER1Q8N108 512 aa14.99□□□□□ -0.01
TOP3B-210ENST00000444502 MTUS2Q5JR59 1369 aa14.98□□□□□ -0.01
TOP3B-210ENST00000444502 CARMIL1Q5VZK9 1371 aa14.96□□□□□ -0.01
TOP3B-210ENST00000444502 BICRAQ9NZM4 1560 aa14.95□□□□□ -0.02
TOP3B-210ENST00000444502 CADPSQ9ULU8 1353 aa14.95□□□□□ -0.02
TOP3B-210ENST00000444502 BCANQ96GW7 911 aa14.92□□□□□ -0.02
TOP3B-210ENST00000444502 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.92□□□□□ -0.024e-7■■■□□ 14.6
TOP3B-210ENST00000444502 PDS5BQ9NTI5 1447 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms