RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 NISCHQ9Y2I1 1504 aa21.67■■□□□ 1.06
TOP3A-209ENST00000580095 SHROOM4Q9ULL8 1493 aa18.84■□□□□ 0.61
TOP3A-209ENST00000580095 CCDC180Q9P1Z9 1646 aa18.68■□□□□ 0.58
TOP3A-209ENST00000580095 SUPT5HO00267 1087 aaKnown RBP18.45■□□□□ 0.54
TOP3A-209ENST00000580095 DCAF8L2P0C7V8 631 aa18.44■□□□□ 0.54
TOP3A-209ENST00000580095 ZCCHC6Q5VYS8 1495 aaKnown RBP18.29■□□□□ 0.52
TOP3A-209ENST00000580095 CHIC1Q5VXU3 224 aa17.76■□□□□ 0.43
TOP3A-209ENST00000580095 MYO15BQ96JP2 1530 aa17.68■□□□□ 0.42
TOP3A-209ENST00000580095 DCAF1Q9Y4B6 1507 aa17.66■□□□□ 0.42
TOP3A-209ENST00000580095 ABCC9O60706 1549 aa17.5■□□□□ 0.39
TOP3A-209ENST00000580095 NACADO15069 1562 aa17.39■□□□□ 0.37
TOP3A-209ENST00000580095 LOC105371045A0A1W2PR82 267 aa17.39■□□□□ 0.37
TOP3A-209ENST00000580095 SCRIBQ14160 1630 aa17.39■□□□□ 0.37
TOP3A-209ENST00000580095 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
TOP3A-209ENST00000580095 RB1CC1Q8TDY2 1594 aa17.24■□□□□ 0.35
TOP3A-209ENST00000580095 RSF1Q96T23 1441 aaPredicted RBP17.23■□□□□ 0.35
TOP3A-209ENST00000580095 EHMT2Q96KQ7 1210 aa17.12■□□□□ 0.33
TOP3A-209ENST00000580095 FAM9AQ8IZU1 332 aaPredicted RBP17.11■□□□□ 0.33
TOP3A-209ENST00000580095 HRCP23327 699 aa17.1■□□□□ 0.33
TOP3A-209ENST00000580095 CECR2Q9BXF3 1484 aa17.07■□□□□ 0.32
TOP3A-209ENST00000580095 TRIM41Q8WV44 630 aa17.07■□□□□ 0.32
TOP3A-209ENST00000580095 PPARGC1BQ86YN6 1023 aaKnown RBP16.98■□□□□ 0.31
TOP3A-209ENST00000580095 MROH2BQ7Z745 1585 aa16.94■□□□□ 0.3
TOP3A-209ENST00000580095 UNC13AQ9UPW8 1703 aa16.86■□□□□ 0.29
TOP3A-209ENST00000580095 WIZO95785 1651 aa16.82■□□□□ 0.28
TOP3A-209ENST00000580095 TRIM26Q12899 539 aaPredicted RBP16.8■□□□□ 0.28
TOP3A-209ENST00000580095 PABPN1Q86U42 306 aaKnown RBP eCLIP16.71■□□□□ 0.27
TOP3A-209ENST00000580095 BICRAQ9NZM4 1560 aa16.71■□□□□ 0.27
TOP3A-209ENST00000580095 PELP1Q8IZL8 1130 aaKnown RBP16.61■□□□□ 0.25
TOP3A-209ENST00000580095 BAZ1AQ9NRL2 1556 aaPredicted RBP16.61■□□□□ 0.25
TOP3A-209ENST00000580095 TTBK1Q5TCY1 1321 aaPredicted RBP16.52■□□□□ 0.23
TOP3A-209ENST00000580095 ABCC8Q09428 1581 aa16.52■□□□□ 0.23
TOP3A-209ENST00000580095 CCDC88BA6NC98 1476 aa16.51■□□□□ 0.23
TOP3A-209ENST00000580095 SMARCA4P51532 1647 aa16.49■□□□□ 0.23
TOP3A-209ENST00000580095 TOP2AP11388 1531 aaKnown RBP16.45■□□□□ 0.22
TOP3A-209ENST00000580095 EIF4G1Q04637 1599 aaKnown RBP16.43■□□□□ 0.22
TOP3A-209ENST00000580095 SMARCA2P51531 1590 aa16.4■□□□□ 0.22
TOP3A-209ENST00000580095 SOGA1O94964 1423 aa16.39■□□□□ 0.21
TOP3A-209ENST00000580095 RUSC2Q8N2Y8 1516 aa16.33■□□□□ 0.2
TOP3A-209ENST00000580095 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.32■□□□□ 0.2
TOP3A-209ENST00000580095 UBTFP17480 764 aaKnown RBP16.32■□□□□ 0.2
TOP3A-209ENST00000580095 ZEB1P37275 1124 aaPredicted RBP16.29■□□□□ 0.2
TOP3A-209ENST00000580095 CSRNP3Q8WYN3 585 aa16.26■□□□□ 0.19
TOP3A-209ENST00000580095 PEG3Q9GZU2 1588 aa16.24■□□□□ 0.19
TOP3A-209ENST00000580095 CEP162Q5TB80 1403 aa16.23■□□□□ 0.19
TOP3A-209ENST00000580095 RANGAP1P46060 587 aaPredicted RBP16.21■□□□□ 0.19
TOP3A-209ENST00000580095 CCER1Q8TC90 406 aaPredicted RBP16.21■□□□□ 0.18
TOP3A-209ENST00000580095 MYT1Q01538 1121 aa16.19■□□□□ 0.18
TOP3A-209ENST00000580095 WRNQ14191 1432 aaPredicted RBP eCLIP16.18■□□□□ 0.18
TOP3A-209ENST00000580095 ATAD2BQ9ULI0 1458 aa16.15■□□□□ 0.18
TOP3A-209ENST00000580095 TNIKQ9UKE5 1360 aa16.13■□□□□ 0.17
TOP3A-209ENST00000580095 BAZ1BQ9UIG0 1483 aaKnown RBP16.12■□□□□ 0.17
TOP3A-209ENST00000580095 SYNJ1O43426 1573 aa16.08■□□□□ 0.16
TOP3A-209ENST00000580095 EEA1Q15075 1411 aa16.05■□□□□ 0.16
TOP3A-209ENST00000580095 GOLGA3Q08378 1498 aa16.04■□□□□ 0.16
TOP3A-209ENST00000580095 HMGXB3Q12766 1538 aa16.02■□□□□ 0.16
TOP3A-209ENST00000580095 NCAPD3P42695 1498 aa16.02■□□□□ 0.16
TOP3A-209ENST00000580095 HNRNPUL2Q1KMD3 747 aaKnown RBP15.99■□□□□ 0.15
TOP3A-209ENST00000580095 CC2D2AQ9P2K1 1620 aa15.97■□□□□ 0.15
TOP3A-209ENST00000580095 RAPGEF2Q9Y4G8 1499 aa15.95■□□□□ 0.14
TOP3A-209ENST00000580095 CLIP1P30622 1438 aa15.94■□□□□ 0.14
TOP3A-209ENST00000580095 CEP164Q9UPV0 1460 aa15.94■□□□□ 0.14
TOP3A-209ENST00000580095 APLP2Q06481 763 aa15.86■□□□□ 0.13
TOP3A-209ENST00000580095 KIF21BO75037 1637 aa15.82■□□□□ 0.12
TOP3A-209ENST00000580095 DIEXFQ68CQ4 756 aaKnown RBP15.82■□□□□ 0.12
TOP3A-209ENST00000580095 SCAF1Q9H7N4 1312 aaKnown RBP15.81■□□□□ 0.12
TOP3A-209ENST00000580095 VPS8Q8N3P4 1428 aa15.8■□□□□ 0.12
TOP3A-209ENST00000580095 TOP2BQ02880 1626 aa15.79■□□□□ 0.12
TOP3A-209ENST00000580095 CUX1P39880 1505 aa15.74■□□□□ 0.11
TOP3A-209ENST00000580095 KANK4Q5T7N3 995 aaPredicted RBP15.73■□□□□ 0.11
TOP3A-209ENST00000580095 PRXQ9BXM0 1461 aa15.69■□□□□ 0.1
TOP3A-209ENST00000580095 NEUROD1Q13562 356 aa15.68■□□□□ 0.1
TOP3A-209ENST00000580095 BIVM-ERCC5R4GMW8 1640 aa15.67■□□□□ 0.1
TOP3A-209ENST00000580095 CFTRP13569 1480 aa15.67■□□□□ 0.1
TOP3A-209ENST00000580095 KIF27Q86VH2 1401 aa15.66■□□□□ 0.1
TOP3A-209ENST00000580095 ZNF316A6NFI3 1004 aaPredicted RBP15.66■□□□□ 0.1
TOP3A-209ENST00000580095 ITGAEP38570 1179 aa15.64■□□□□ 0.09
TOP3A-209ENST00000580095 ARAP1Q96P48 1450 aa15.64■□□□□ 0.09
TOP3A-209ENST00000580095 YTHDC1Q96MU7 727 aaKnown RBP15.61■□□□□ 0.09
TOP3A-209ENST00000580095 ACIN1Q9UKV3 1341 aaKnown RBP15.6■□□□□ 0.09
TOP3A-209ENST00000580095 CUX2O14529 1486 aa15.59■□□□□ 0.09
TOP3A-209ENST00000580095 DNAJC5BQ9UF47 199 aa15.59■□□□□ 0.09
TOP3A-209ENST00000580095 P3H3Q8IVL6 736 aa15.58■□□□□ 0.08
TOP3A-209ENST00000580095 PRDM2Q13029 1718 aa15.58■□□□□ 0.08
TOP3A-209ENST00000580095 ERICH3Q5RHP9 1530 aa15.57■□□□□ 0.08
TOP3A-209ENST00000580095 CADPSQ9ULU8 1353 aa15.56■□□□□ 0.08
TOP3A-209ENST00000580095 IGF1RP08069 1367 aa15.55■□□□□ 0.08
TOP3A-209ENST00000580095 ATP1B4Q9UN42 357 aaPredicted RBP15.54■□□□□ 0.08
TOP3A-209ENST00000580095 MIER1Q8N108 512 aa15.54■□□□□ 0.08
TOP3A-209ENST00000580095 ARHGAP35Q9NRY4 1499 aa15.53■□□□□ 0.08
TOP3A-209ENST00000580095 LAMC3Q9Y6N6 1575 aa15.52■□□□□ 0.07
TOP3A-209ENST00000580095 GTF3C3Q9Y5Q9 886 aa15.51■□□□□ 0.07
TOP3A-209ENST00000580095 FGD5Q6ZNL6 1462 aa15.49■□□□□ 0.07
TOP3A-209ENST00000580095 CARMIL1Q5VZK9 1371 aa15.49■□□□□ 0.07
TOP3A-209ENST00000580095 CENPBP07199 599 aaPredicted RBP15.48■□□□□ 0.07
TOP3A-209ENST00000580095 DHX57Q6P158 1386 aaKnown RBP15.46■□□□□ 0.07
TOP3A-209ENST00000580095 NESP48681 1621 aa15.44■□□□□ 0.06
TOP3A-209ENST00000580095 RAD54L2Q9Y4B4 1467 aa15.43■□□□□ 0.06
TOP3A-209ENST00000580095 CCNB3Q8WWL7 1395 aa15.42■□□□□ 0.06
TOP3A-209ENST00000580095 FANCD2Q9BXW9 1451 aa15.42■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms