RNA–Protein interactions for RNA: ENST00000519132.5

CLK4-202, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,129 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-202ENST00000519132 CHIC1Q5VXU3 224 aa21.61■■□□□ 1.05
CLK4-202ENST00000519132 AEBP2Q6ZN18 517 aaPredicted RBP21.37■■□□□ 1.01
CLK4-202ENST00000519132 PHF23Q9BUL5 403 aaPredicted RBP19.51■□□□□ 0.71
CLK4-202ENST00000519132 EHMT2Q96KQ7 1210 aa17.98■□□□□ 0.47
CLK4-202ENST00000519132 PLPPR3Q6T4P5 718 aa17.96■□□□□ 0.47
CLK4-202ENST00000519132 KCNA4P22459 653 aa17.49■□□□□ 0.39
CLK4-202ENST00000519132 ADRA2BP18089 450 aa17.45■□□□□ 0.38
CLK4-202ENST00000519132 SENP3Q9H4L4 574 aaPredicted RBP17.36■□□□□ 0.37
CLK4-202ENST00000519132 CSRNP3Q8WYN3 585 aa16.99■□□□□ 0.31
CLK4-202ENST00000519132 PPP6R1Q9UPN7 881 aa16.97■□□□□ 0.31
CLK4-202ENST00000519132 SLC4A1APQ9BWU0 796 aaKnown RBP16.6■□□□□ 0.25
CLK4-202ENST00000519132 SLC24A1O60721 1099 aa16.46■□□□□ 0.23
CLK4-202ENST00000519132 FOXD1Q16676 465 aa16.36■□□□□ 0.21
CLK4-202ENST00000519132 RTN4Q9NQC3 1192 aaKnown RBP16.27■□□□□ 0.2
CLK4-202ENST00000519132 ZBTB22O15209 634 aa16.27■□□□□ 0.19
CLK4-202ENST00000519132 PPP4R3CPQ6ZMV5 832 aa16.17■□□□□ 0.18
CLK4-202ENST00000519132 NPM3O75607 178 aaKnown RBP15.98■□□□□ 0.15
CLK4-202ENST00000519132 NCBP3Q53F19 620 aaKnown RBP15.7■□□□□ 0.1
CLK4-202ENST00000519132 PIAS4Q8N2W9 510 aaPredicted RBP15.68■□□□□ 0.1
CLK4-202ENST00000519132 AMER1Q5JTC6 1135 aaPredicted RBP15.65■□□□□ 0.1
CLK4-202ENST00000519132 FOXD4L1Q9NU39 408 aa15.35■□□□□ 0.05
CLK4-202ENST00000519132 FKBP8Q14318 412 aa15.25■□□□□ 0.03
CLK4-202ENST00000519132 CNKSR2Q8WXI2 1034 aa15.23■□□□□ 0.03
CLK4-202ENST00000519132 MAPK8IP2Q13387 824 aaPredicted RBP15.14■□□□□ 0.01
CLK4-202ENST00000519132 PRKCSHP14314 528 aaPredicted RBP14.99□□□□□ -0.01
CLK4-202ENST00000519132 NISCHQ9Y2I1 1504 aa14.9□□□□□ -0.02
CLK4-202ENST00000519132 SLC4A2P04920 1241 aa14.89□□□□□ -0.03
CLK4-202ENST00000519132 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
CLK4-202ENST00000519132 DNAJC5BQ9UF47 199 aa14.66□□□□□ -0.06
CLK4-202ENST00000519132 RNF216Q9NWF9 866 aaPredicted RBP14.62□□□□□ -0.07
CLK4-202ENST00000519132 PLCB2Q00722 1185 aa14.61□□□□□ -0.07
CLK4-202ENST00000519132 ATF5Q9Y2D1 282 aaPredicted RBP14.56□□□□□ -0.08
CLK4-202ENST00000519132 HAP1P54257 671 aaPredicted RBP14.53□□□□□ -0.08
CLK4-202ENST00000519132 TAOK2Q9UL54 1235 aa14.45□□□□□ -0.1
CLK4-202ENST00000519132 MYCNP04198 464 aaPredicted RBP14.43□□□□□ -0.1
CLK4-202ENST00000519132 DCAF8L2P0C7V8 631 aa14.38□□□□□ -0.11
CLK4-202ENST00000519132 ATXN8OSP0DMR3 200 aa14.37□□□□□ -0.11
CLK4-202ENST00000519132 TPRNQ4KMQ1 711 aa14.32□□□□□ -0.12
CLK4-202ENST00000519132 BCANQ96GW7 911 aa14.28□□□□□ -0.12
CLK4-202ENST00000519132 HOXD11P31277 338 aaPredicted RBP14.28□□□□□ -0.12
CLK4-202ENST00000519132 FBLN2P98095 1184 aa14.25□□□□□ -0.13
CLK4-202ENST00000519132 KDM2AQ9Y2K7 1162 aa14.23□□□□□ -0.13
CLK4-202ENST00000519132 DMRT2Q9Y5R5 561 aa14.13□□□□□ -0.15
CLK4-202ENST00000519132 MSH5O43196 834 aa14.1□□□□□ -0.15
CLK4-202ENST00000519132 IFNLR1Q8IU57 520 aaPredicted RBP14.08□□□□□ -0.16
CLK4-202ENST00000519132 TIMELESSQ9UNS1 1208 aa14.07□□□□□ -0.16
CLK4-202ENST00000519132 PKD2Q13563 968 aa14.07□□□□□ -0.16
CLK4-202ENST00000519132 VASPP50552 380 aaPredicted RBP13.97□□□□□ -0.17
CLK4-202ENST00000519132 VSIG10Q8N0Z9 540 aa13.97□□□□□ -0.17
CLK4-202ENST00000519132 NPM1P06748 294 aaKnown RBP eCLIP13.96□□□□□ -0.17
CLK4-202ENST00000519132 TULP1O00294 542 aaPredicted RBP13.94□□□□□ -0.18
CLK4-202ENST00000519132 CFAP44Q96MT7 982 aa13.9□□□□□ -0.18
CLK4-202ENST00000519132 PAXIP1Q6ZW49 1069 aaPredicted RBP13.89□□□□□ -0.19
CLK4-202ENST00000519132 SPDYE4A6NLX3 237 aa13.88□□□□□ -0.19
CLK4-202ENST00000519132 MKRN4PQ13434 485 aaPredicted RBP13.83□□□□□ -0.2
CLK4-202ENST00000519132 FBXO3Q9UK99 471 aa13.83□□□□□ -0.2
CLK4-202ENST00000519132 TSHZ2Q9NRE2 1034 aa13.82□□□□□ -0.2
CLK4-202ENST00000519132 DCAF8L1A6NGE4 600 aa13.81□□□□□ -0.2
CLK4-202ENST00000519132 U3KPZ7 1027 aaPredicted RBP13.8□□□□□ -0.2
CLK4-202ENST00000519132 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.74□□□□□ -0.21
CLK4-202ENST00000519132 ZNF219Q9P2Y4 722 aaPredicted RBP13.73□□□□□ -0.21
CLK4-202ENST00000519132 PROM2Q8N271 834 aa13.68□□□□□ -0.22
CLK4-202ENST00000519132 RGL2O15211 777 aa13.65□□□□□ -0.22
CLK4-202ENST00000519132 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.62□□□□□ -0.23
CLK4-202ENST00000519132 BBXQ8WY36 941 aaPredicted RBP13.62□□□□□ -0.23
CLK4-202ENST00000519132 SAMD1Q6SPF0 538 aaPredicted RBP13.61□□□□□ -0.23
CLK4-202ENST00000519132 ECM2O94769 699 aaPredicted RBP13.59□□□□□ -0.23
CLK4-202ENST00000519132 GTF3C3Q9Y5Q9 886 aa13.57□□□□□ -0.24
CLK4-202ENST00000519132 DAXXQ9UER7 740 aaPredicted RBP13.55□□□□□ -0.24
CLK4-202ENST00000519132 SPRYD3Q8NCJ5 442 aa13.48□□□□□ -0.25
CLK4-202ENST00000519132 KLHL34Q8N239 644 aa13.46□□□□□ -0.26
CLK4-202ENST00000519132 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.44□□□□□ -0.26
CLK4-202ENST00000519132 HNRNPUL2Q1KMD3 747 aaKnown RBP13.44□□□□□ -0.26
CLK4-202ENST00000519132 CHGAP10645 457 aaKnown RBP13.42□□□□□ -0.26
CLK4-202ENST00000519132 NBR1Q14596 966 aa13.4□□□□□ -0.26
CLK4-202ENST00000519132 ARXQ96QS3 562 aa13.36□□□□□ -0.27
CLK4-202ENST00000519132 SPOCK2Q92563 424 aa13.34□□□□□ -0.27
CLK4-202ENST00000519132 TMEM132AQ24JP5 1023 aa13.31□□□□□ -0.28
CLK4-202ENST00000519132 SPINK5Q9NQ38 1064 aaPredicted RBP13.27□□□□□ -0.28
CLK4-202ENST00000519132 POLA2Q14181 598 aa13.27□□□□□ -0.29
CLK4-202ENST00000519132 TRHP20396 242 aaPredicted RBP13.26□□□□□ -0.29
CLK4-202ENST00000519132 DNAJC5Q9H3Z4 198 aa13.23□□□□□ -0.29
CLK4-202ENST00000519132 C14orf37Q86TY3 774 aa13.19□□□□□ -0.3
CLK4-202ENST00000519132 CIZ1Q9ULV3 898 aaPredicted RBP13.19□□□□□ -0.3
CLK4-202ENST00000519132 NKX1-1Q15270 411 aaPredicted RBP13.17□□□□□ -0.3
CLK4-202ENST00000519132 SUPT5HO00267 1087 aaKnown RBP13.17□□□□□ -0.3
CLK4-202ENST00000519132 RNF25Q96BH1 459 aaPredicted RBP13.16□□□□□ -0.3
CLK4-202ENST00000519132 CCDC180Q9P1Z9 1646 aa13.16□□□□□ -0.3
CLK4-202ENST00000519132 PLCD3Q8N3E9 789 aa13.15□□□□□ -0.31
CLK4-202ENST00000519132 HOMEZQ8IX15 550 aa13.12□□□□□ -0.31
CLK4-202ENST00000519132 MIER1Q8N108 512 aa13.06□□□□□ -0.32
CLK4-202ENST00000519132 ABCB7O75027 752 aa13.03□□□□□ -0.32
CLK4-202ENST00000519132 HS6ST3Q8IZP7 471 aa12.98□□□□□ -0.33
CLK4-202ENST00000519132 GTPBP6O43824 516 aaPredicted RBP12.97□□□□□ -0.33
CLK4-202ENST00000519132 PODXL2Q9NZ53 605 aa12.93□□□□□ -0.34
CLK4-202ENST00000519132 CAPN15O75808 1086 aa12.91□□□□□ -0.34
CLK4-202ENST00000519132 BRPF1P55201 1214 aaPredicted RBP12.91□□□□□ -0.34
CLK4-202ENST00000519132 ZNF692Q9BU19 519 aaPredicted RBP12.89□□□□□ -0.35
CLK4-202ENST00000519132 UBTFP17480 764 aaKnown RBP12.87□□□□□ -0.35
CLK4-202ENST00000519132 OSCARQ8IYS5 282 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms