RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 NISCHQ9Y2I1 1504 aa25.76■■□□□ 1.71
TOP3A-216ENST00000583804 CCDC180Q9P1Z9 1646 aa22.69■■□□□ 1.22
TOP3A-216ENST00000583804 ABCC9O60706 1549 aa22.01■■□□□ 1.11
TOP3A-216ENST00000583804 DCAF8L2P0C7V8 631 aa21.58■■□□□ 1.04
TOP3A-216ENST00000583804 ZCCHC6Q5VYS8 1495 aaKnown RBP21.51■■□□□ 1.03
TOP3A-216ENST00000583804 NACADO15069 1562 aa21.29■■□□□ 1
TOP3A-216ENST00000583804 DCAF1Q9Y4B6 1507 aa21.28■■□□□ 1
TOP3A-216ENST00000583804 RB1CC1Q8TDY2 1594 aa21.24■□□□□ 0.99
TOP3A-216ENST00000583804 MYO15BQ96JP2 1530 aa21.23■□□□□ 0.99
TOP3A-216ENST00000583804 SCRIBQ14160 1630 aa20.82■□□□□ 0.92
TOP3A-216ENST00000583804 UNC13AQ9UPW8 1703 aa20.72■□□□□ 0.91
TOP3A-216ENST00000583804 SHROOM4Q9ULL8 1493 aa20.69■□□□□ 0.9
TOP3A-216ENST00000583804 PABPN1Q86U42 306 aaKnown RBP eCLIP20.68■□□□□ 0.9
TOP3A-216ENST00000583804 BICRAQ9NZM4 1560 aa20.57■□□□□ 0.88
TOP3A-216ENST00000583804 DNAJC5BQ9UF47 199 aa20.18■□□□□ 0.82
TOP3A-216ENST00000583804 CECR2Q9BXF3 1484 aa20.06■□□□□ 0.8
TOP3A-216ENST00000583804 EIF4G1Q04637 1599 aaKnown RBP20.02■□□□□ 0.8
TOP3A-216ENST00000583804 BAZ1AQ9NRL2 1556 aaPredicted RBP19.94■□□□□ 0.78
TOP3A-216ENST00000583804 SMARCA4P51532 1647 aa19.91■□□□□ 0.78
TOP3A-216ENST00000583804 MROH2BQ7Z745 1585 aa19.88■□□□□ 0.77
TOP3A-216ENST00000583804 CC2D2AQ9P2K1 1620 aa19.87■□□□□ 0.77
TOP3A-216ENST00000583804 RSF1Q96T23 1441 aaPredicted RBP19.78■□□□□ 0.76
TOP3A-216ENST00000583804 ATAD2BQ9ULI0 1458 aa19.73■□□□□ 0.75
TOP3A-216ENST00000583804 SMARCA2P51531 1590 aa19.71■□□□□ 0.75
TOP3A-216ENST00000583804 WIZO95785 1651 aa19.68■□□□□ 0.74
TOP3A-216ENST00000583804 SUPT5HO00267 1087 aaKnown RBP19.67■□□□□ 0.74
TOP3A-216ENST00000583804 PEG3Q9GZU2 1588 aa19.66■□□□□ 0.74
TOP3A-216ENST00000583804 NCAPD3P42695 1498 aa19.66■□□□□ 0.74
TOP3A-216ENST00000583804 BAZ1BQ9UIG0 1483 aaKnown RBP19.61■□□□□ 0.73
TOP3A-216ENST00000583804 HMGXB3Q12766 1538 aa19.56■□□□□ 0.72
TOP3A-216ENST00000583804 TOP2AP11388 1531 aaKnown RBP19.47■□□□□ 0.71
TOP3A-216ENST00000583804 CCDC88BA6NC98 1476 aa19.28■□□□□ 0.68
TOP3A-216ENST00000583804 AEBP2Q6ZN18 517 aaPredicted RBP19.27■□□□□ 0.67
TOP3A-216ENST00000583804 CADPSQ9ULU8 1353 aa19.14■□□□□ 0.65
TOP3A-216ENST00000583804 NESP48681 1621 aa19.13■□□□□ 0.65
TOP3A-216ENST00000583804 CFTRP13569 1480 aa19.07■□□□□ 0.64
TOP3A-216ENST00000583804 LAMC3Q9Y6N6 1575 aa19.07■□□□□ 0.64
TOP3A-216ENST00000583804 PDS5BQ9NTI5 1447 aa18.98■□□□□ 0.63
TOP3A-216ENST00000583804 ERCC6Q03468 1493 aa18.95■□□□□ 0.62
TOP3A-216ENST00000583804 CHIC1Q5VXU3 224 aa18.95■□□□□ 0.62
TOP3A-216ENST00000583804 FANCD2Q9BXW9 1451 aa18.92■□□□□ 0.62
TOP3A-216ENST00000583804 PRDM2Q13029 1718 aa18.87■□□□□ 0.61
TOP3A-216ENST00000583804 KIF21AQ7Z4S6 1674 aa18.86■□□□□ 0.61
TOP3A-216ENST00000583804 CEP164Q9UPV0 1460 aa18.85■□□□□ 0.61
TOP3A-216ENST00000583804 MRC2Q9UBG0 1479 aa18.75■□□□□ 0.59
TOP3A-216ENST00000583804 URB2Q14146 1524 aaKnown RBP18.69■□□□□ 0.58
TOP3A-216ENST00000583804 ABCC8Q09428 1581 aa18.68■□□□□ 0.58
TOP3A-216ENST00000583804 THOC2Q8NI27 1593 aaKnown RBP18.68■□□□□ 0.58
TOP3A-216ENST00000583804 WRNQ14191 1432 aaPredicted RBP eCLIP18.65■□□□□ 0.58
TOP3A-216ENST00000583804 WDR62O43379 1518 aa18.64■□□□□ 0.57
TOP3A-216ENST00000583804 TOPBP1Q92547 1522 aa18.64■□□□□ 0.57
TOP3A-216ENST00000583804 DNAJC5Q9H3Z4 198 aa18.64■□□□□ 0.57
TOP3A-216ENST00000583804 DNMBPQ6XZF7 1577 aa18.63■□□□□ 0.57
TOP3A-216ENST00000583804 CUX1P39880 1505 aa18.62■□□□□ 0.57
TOP3A-216ENST00000583804 SYNJ1O43426 1573 aa18.56■□□□□ 0.56
TOP3A-216ENST00000583804 CUX2O14529 1486 aa18.55■□□□□ 0.56
TOP3A-216ENST00000583804 TRIM41Q8WV44 630 aa18.54■□□□□ 0.56
TOP3A-216ENST00000583804 TOP2BQ02880 1626 aa18.53■□□□□ 0.56
TOP3A-216ENST00000583804 FGD5Q6ZNL6 1462 aa18.52■□□□□ 0.56
TOP3A-216ENST00000583804 POLA1P09884 1462 aaPredicted RBP18.51■□□□□ 0.55
TOP3A-216ENST00000583804 BIVM-ERCC5R4GMW8 1640 aa18.5■□□□□ 0.55
TOP3A-216ENST00000583804 SOGA1O94964 1423 aa18.48■□□□□ 0.55
TOP3A-216ENST00000583804 RAD54L2Q9Y4B4 1467 aa18.46■□□□□ 0.55
TOP3A-216ENST00000583804 IFT140Q96RY7 1462 aa18.43■□□□□ 0.54
TOP3A-216ENST00000583804 TARBP1Q13395 1621 aaKnown RBP18.37■□□□□ 0.53
TOP3A-216ENST00000583804 ZNF608Q9ULD9 1512 aaPredicted RBP18.35■□□□□ 0.53
TOP3A-216ENST00000583804 TDRD9Q8NDG6 1382 aaKnown RBP18.35■□□□□ 0.53
TOP3A-216ENST00000583804 ABCA10Q8WWZ4 1543 aa18.33■□□□□ 0.52
TOP3A-216ENST00000583804 AQRO60306 1485 aaKnown RBP eCLIP18.31■□□□□ 0.529e-9■■■■■ 37.6
TOP3A-216ENST00000583804 WDR97A6NE52 1622 aa18.28■□□□□ 0.52
TOP3A-216ENST00000583804 KIF27Q86VH2 1401 aa18.25■□□□□ 0.51
TOP3A-216ENST00000583804 EIF4G3O43432 1585 aaKnown RBP18.25■□□□□ 0.51
TOP3A-216ENST00000583804 GAPVD1Q14C86 1478 aa18.25■□□□□ 0.51
TOP3A-216ENST00000583804 ABCA5Q8WWZ7 1642 aa18.2■□□□□ 0.5
TOP3A-216ENST00000583804 RUSC2Q8N2Y8 1516 aa18.2■□□□□ 0.5
TOP3A-216ENST00000583804 FAM9AQ8IZU1 332 aaPredicted RBP18.19■□□□□ 0.5
TOP3A-216ENST00000583804 GRIN2BQ13224 1484 aa18.19■□□□□ 0.5
TOP3A-216ENST00000583804 IGF1RP08069 1367 aa18.13■□□□□ 0.49
TOP3A-216ENST00000583804 PBRM1Q86U86 1689 aa18.13■□□□□ 0.49
TOP3A-216ENST00000583804 SNAPC4Q5SXM2 1469 aa18.12■□□□□ 0.49
TOP3A-216ENST00000583804 ERICH3Q5RHP9 1530 aa18.11■□□□□ 0.49
TOP3A-216ENST00000583804 FBLN2P98095 1184 aa18.11■□□□□ 0.49
TOP3A-216ENST00000583804 CSRNP3Q8WYN3 585 aa18.1■□□□□ 0.49
TOP3A-216ENST00000583804 EEA1Q15075 1411 aa18.1■□□□□ 0.49
TOP3A-216ENST00000583804 MAGI1Q96QZ7 1491 aaPredicted RBP18.08■□□□□ 0.49
TOP3A-216ENST00000583804 CHMP7Q8WUX9 453 aaPredicted RBP18.07■□□□□ 0.48
TOP3A-216ENST00000583804 FHAD1B1AJZ9 1412 aa18.04■□□□□ 0.48
TOP3A-216ENST00000583804 CARMIL1Q5VZK9 1371 aa18.04■□□□□ 0.48
TOP3A-216ENST00000583804 SYNJ2O15056 1496 aa18.02■□□□□ 0.48
TOP3A-216ENST00000583804 ADAMTS12P58397 1594 aa18.01■□□□□ 0.47
TOP3A-216ENST00000583804 CUL7Q14999 1698 aa18■□□□□ 0.47
TOP3A-216ENST00000583804 EHMT2Q96KQ7 1210 aa18■□□□□ 0.47
TOP3A-216ENST00000583804 PRXQ9BXM0 1461 aa17.96■□□□□ 0.46
TOP3A-216ENST00000583804 GRIN2AQ12879 1464 aa17.95■□□□□ 0.46
TOP3A-216ENST00000583804 RAPGEF2Q9Y4G8 1499 aa17.95■□□□□ 0.46
TOP3A-216ENST00000583804 CHD1O14646 1710 aa17.95■□□□□ 0.46
TOP3A-216ENST00000583804 OSCARQ8IYS5 282 aa17.94■□□□□ 0.46
TOP3A-216ENST00000583804 KIF21BO75037 1637 aa17.86■□□□□ 0.45
TOP3A-216ENST00000583804 UBTFP17480 764 aaKnown RBP17.85■□□□□ 0.45
TOP3A-216ENST00000583804 NUP160Q12769 1436 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms