RNA–Protein interactions for RNA: ENST00000321105.9

TOP3A-201, Transcript of DNA topoisomerase III alpha, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOP3A, Length 4,056 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-201ENST00000321105 NISCHQ9Y2I1 1504 aa20.67■□□□□ 0.9
TOP3A-201ENST00000321105 DCAF8L2P0C7V8 631 aa20.12■□□□□ 0.81
TOP3A-201ENST00000321105 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
TOP3A-201ENST00000321105 SUPT5HO00267 1087 aaKnown RBP19.31■□□□□ 0.68
TOP3A-201ENST00000321105 EHMT2Q96KQ7 1210 aa18.56■□□□□ 0.56
TOP3A-201ENST00000321105 FAM9AQ8IZU1 332 aaPredicted RBP18.15■□□□□ 0.5
TOP3A-201ENST00000321105 TTBK1Q5TCY1 1321 aaPredicted RBP17.81■□□□□ 0.44
TOP3A-201ENST00000321105 PCGF6Q9BYE7 350 aa17.79■□□□□ 0.44
TOP3A-201ENST00000321105 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
TOP3A-201ENST00000321105 LOC105371045A0A1W2PR82 267 aa17.64■□□□□ 0.41
TOP3A-201ENST00000321105 RANGAP1P46060 587 aaPredicted RBP17.63■□□□□ 0.41
TOP3A-201ENST00000321105 ABCC9O60706 1549 aa17.63■□□□□ 0.41
TOP3A-201ENST00000321105 CHIC1Q5VXU3 224 aa17.61■□□□□ 0.41
TOP3A-201ENST00000321105 PPARGC1BQ86YN6 1023 aaKnown RBP17.56■□□□□ 0.4
TOP3A-201ENST00000321105 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.38
TOP3A-201ENST00000321105 UBTFP17480 764 aaKnown RBP17.29■□□□□ 0.36
TOP3A-201ENST00000321105 ZCCHC6Q5VYS8 1495 aaKnown RBP17.19■□□□□ 0.34
TOP3A-201ENST00000321105 APLP2Q06481 763 aa17.18■□□□□ 0.34
TOP3A-201ENST00000321105 ATP1B4Q9UN42 357 aaPredicted RBP17.07■□□□□ 0.32
TOP3A-201ENST00000321105 CCER1Q8TC90 406 aaPredicted RBP17.01■□□□□ 0.31
TOP3A-201ENST00000321105 SCRIBQ14160 1630 aa16.98■□□□□ 0.31
TOP3A-201ENST00000321105 TRIM26Q12899 539 aaPredicted RBP16.93■□□□□ 0.3
TOP3A-201ENST00000321105 HRCP23327 699 aa16.87■□□□□ 0.29
TOP3A-201ENST00000321105 CCDC180Q9P1Z9 1646 aa16.84■□□□□ 0.29
TOP3A-201ENST00000321105 ITGAEP38570 1179 aa16.79■□□□□ 0.28
TOP3A-201ENST00000321105 HNRNPUL2Q1KMD3 747 aaKnown RBP16.78■□□□□ 0.28
TOP3A-201ENST00000321105 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.76■□□□□ 0.27
TOP3A-201ENST00000321105 MYO15BQ96JP2 1530 aa16.73■□□□□ 0.27
TOP3A-201ENST00000321105 ZEB1P37275 1124 aaPredicted RBP16.62■□□□□ 0.25
TOP3A-201ENST00000321105 RSF1Q96T23 1441 aaPredicted RBP16.61■□□□□ 0.25
TOP3A-201ENST00000321105 YTHDC1Q96MU7 727 aaKnown RBP16.57■□□□□ 0.24
TOP3A-201ENST00000321105 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
TOP3A-201ENST00000321105 CSRNP3Q8WYN3 585 aa16.5■□□□□ 0.23
TOP3A-201ENST00000321105 P3H3Q8IVL6 736 aa16.45■□□□□ 0.22
TOP3A-201ENST00000321105 ARID3CA6NKF2 412 aa16.35■□□□□ 0.21
TOP3A-201ENST00000321105 FAM50AQ14320 339 aaKnown RBP16.3■□□□□ 0.2
TOP3A-201ENST00000321105 RB1CC1Q8TDY2 1594 aa16.27■□□□□ 0.2
TOP3A-201ENST00000321105 CNGB1Q14028 1251 aaPredicted RBP16.25■□□□□ 0.19
TOP3A-201ENST00000321105 DCAF1Q9Y4B6 1507 aa16.24■□□□□ 0.19
TOP3A-201ENST00000321105 FBLN2P98095 1184 aa16.24■□□□□ 0.19
TOP3A-201ENST00000321105 NACADO15069 1562 aa16.24■□□□□ 0.19
TOP3A-201ENST00000321105 MROH2BQ7Z745 1585 aa16.23■□□□□ 0.19
TOP3A-201ENST00000321105 CENPBP07199 599 aaPredicted RBP16.22■□□□□ 0.19
TOP3A-201ENST00000321105 DIEXFQ68CQ4 756 aaKnown RBP16.17■□□□□ 0.18
TOP3A-201ENST00000321105 NEUROD1Q13562 356 aa16.16■□□□□ 0.18
TOP3A-201ENST00000321105 POLR3GLQ9BT43 218 aa16.11■□□□□ 0.17
TOP3A-201ENST00000321105 SOGA1O94964 1423 aa16.06■□□□□ 0.16
TOP3A-201ENST00000321105 MYT1LQ9UL68 1186 aa16.02■□□□□ 0.16
TOP3A-201ENST00000321105 WRNQ14191 1432 aaPredicted RBP eCLIP16.01■□□□□ 0.15
TOP3A-201ENST00000321105 ABCC8Q09428 1581 aa16■□□□□ 0.15
TOP3A-201ENST00000321105 BAZ1AQ9NRL2 1556 aaPredicted RBP16■□□□□ 0.15
TOP3A-201ENST00000321105 TRIM52Q96A61 297 aa15.99■□□□□ 0.15
TOP3A-201ENST00000321105 WIZO95785 1651 aa15.99■□□□□ 0.15
TOP3A-201ENST00000321105 BAZ1BQ9UIG0 1483 aaKnown RBP15.99■□□□□ 0.15
TOP3A-201ENST00000321105 CCDC88BA6NC98 1476 aa15.97■□□□□ 0.15
TOP3A-201ENST00000321105 CEP162Q5TB80 1403 aa15.96■□□□□ 0.15
TOP3A-201ENST00000321105 CLIP1P30622 1438 aa15.92■□□□□ 0.14
TOP3A-201ENST00000321105 ZNF326Q5BKZ1 582 aaKnown RBP15.87■□□□□ 0.13
TOP3A-201ENST00000321105 ZNF777Q9ULD5 760 aaPredicted RBP15.87■□□□□ 0.13
TOP3A-201ENST00000321105 ZNF316A6NFI3 1004 aaPredicted RBP15.87■□□□□ 0.13
TOP3A-201ENST00000321105 CHIC2Q9UKJ5 165 aa15.85■□□□□ 0.13
TOP3A-201ENST00000321105 PELP1Q8IZL8 1130 aaKnown RBP15.84■□□□□ 0.13
TOP3A-201ENST00000321105 HIRIP3Q9BW71 556 aaPredicted RBP15.82■□□□□ 0.12
TOP3A-201ENST00000321105 RUSC2Q8N2Y8 1516 aa15.79■□□□□ 0.12
TOP3A-201ENST00000321105 GTF3C3Q9Y5Q9 886 aa15.78■□□□□ 0.12
TOP3A-201ENST00000321105 GOLGA3Q08378 1498 aa15.77■□□□□ 0.12
TOP3A-201ENST00000321105 TNIKQ9UKE5 1360 aa15.77■□□□□ 0.11
TOP3A-201ENST00000321105 NEFLP07196 543 aa15.71■□□□□ 0.11
TOP3A-201ENST00000321105 KANK4Q5T7N3 995 aaPredicted RBP15.7■□□□□ 0.1
TOP3A-201ENST00000321105 BCANQ96GW7 911 aa15.69■□□□□ 0.1
TOP3A-201ENST00000321105 EEA1Q15075 1411 aa15.67■□□□□ 0.1
TOP3A-201ENST00000321105 KIF27Q86VH2 1401 aa15.67■□□□□ 0.1
TOP3A-201ENST00000321105 RRP7BPQ9NSQ0 103 aa15.65■□□□□ 0.1
TOP3A-201ENST00000321105 ATAD2BQ9ULI0 1458 aa15.65■□□□□ 0.1
TOP3A-201ENST00000321105 DDX10Q13206 875 aaKnown RBP15.65■□□□□ 0.1
TOP3A-201ENST00000321105 CEP164Q9UPV0 1460 aa15.65■□□□□ 0.1
TOP3A-201ENST00000321105 CHMP7Q8WUX9 453 aaPredicted RBP15.64■□□□□ 0.09
TOP3A-201ENST00000321105 MIER1Q8N108 512 aa15.63■□□□□ 0.09
TOP3A-201ENST00000321105 TOP2AP11388 1531 aaKnown RBP15.62■□□□□ 0.09
TOP3A-201ENST00000321105 CUX2O14529 1486 aa15.62■□□□□ 0.09
TOP3A-201ENST00000321105 MTUS2Q5JR59 1369 aa15.61■□□□□ 0.09
TOP3A-201ENST00000321105 SMARCA4P51532 1647 aa15.61■□□□□ 0.09
TOP3A-201ENST00000321105 TDRD9Q8NDG6 1382 aaKnown RBP15.59■□□□□ 0.09
TOP3A-201ENST00000321105 ACIN1Q9UKV3 1341 aaKnown RBP15.58■□□□□ 0.09
TOP3A-201ENST00000321105 SIN3AQ96ST3 1273 aa15.58■□□□□ 0.08
TOP3A-201ENST00000321105 CARMIL1Q5VZK9 1371 aa15.57■□□□□ 0.08
TOP3A-201ENST00000321105 SLC4A1APQ9BWU0 796 aaKnown RBP15.56■□□□□ 0.08
TOP3A-201ENST00000321105 RAPGEF2Q9Y4G8 1499 aa15.54■□□□□ 0.08
TOP3A-201ENST00000321105 CDK11AQ9UQ88 783 aaPredicted RBP15.53■□□□□ 0.08
TOP3A-201ENST00000321105 ANP32CO43423 234 aa15.52■□□□□ 0.07
TOP3A-201ENST00000321105 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.5■□□□□ 0.076e-6■□□□□ 8.3
TOP3A-201ENST00000321105 SMARCA2P51531 1590 aa15.5■□□□□ 0.07
TOP3A-201ENST00000321105 SENP3-EIF4A1A0A087X0R7 540 aa15.5■□□□□ 0.07
TOP3A-201ENST00000321105 KCNH8Q96L42 1107 aa15.49■□□□□ 0.07
TOP3A-201ENST00000321105 TONSLQ96HA7 1378 aa15.49■□□□□ 0.07
TOP3A-201ENST00000321105 SENP3Q9H4L4 574 aaPredicted RBP15.47■□□□□ 0.07
TOP3A-201ENST00000321105 SCAF1Q9H7N4 1312 aaKnown RBP15.47■□□□□ 0.07
TOP3A-201ENST00000321105 DNAJC5BQ9UF47 199 aa15.47■□□□□ 0.07
TOP3A-201ENST00000321105 KDM2AQ9Y2K7 1162 aa15.45■□□□□ 0.06
TOP3A-201ENST00000321105 CADPSQ9ULU8 1353 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms