RNA–Protein interactions for RNA: ENST00000585026.1

CSNK1D-226, Transcript of casein kinase 1 delta, humanhuman

TSL 5

Gene CSNK1D, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1D-226ENST00000585026 NISCHQ9Y2I1 1504 aa26.84■■□□□ 1.89
CSNK1D-226ENST00000585026 ABCC9O60706 1549 aa24.31■■□□□ 1.48
CSNK1D-226ENST00000585026 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
CSNK1D-226ENST00000585026 RB1CC1Q8TDY2 1594 aa23.1■■□□□ 1.29
CSNK1D-226ENST00000585026 DNAJC5BQ9UF47 199 aa22.92■■□□□ 1.26
CSNK1D-226ENST00000585026 NACADO15069 1562 aa22.9■■□□□ 1.26
CSNK1D-226ENST00000585026 DCAF8L2P0C7V8 631 aa22.84■■□□□ 1.25
CSNK1D-226ENST00000585026 PABPN1Q86U42 306 aaKnown RBP eCLIP22.64■■□□□ 1.21
CSNK1D-226ENST00000585026 MYO15BQ96JP2 1530 aa22.55■■□□□ 1.2
CSNK1D-226ENST00000585026 UNC13AQ9UPW8 1703 aa22.36■■□□□ 1.17
CSNK1D-226ENST00000585026 BICRAQ9NZM4 1560 aa22.32■■□□□ 1.16
CSNK1D-226ENST00000585026 ZCCHC6Q5VYS8 1495 aaKnown RBP22.19■■□□□ 1.14
CSNK1D-226ENST00000585026 DCAF1Q9Y4B6 1507 aa22.18■■□□□ 1.14
CSNK1D-226ENST00000585026 SHROOM4Q9ULL8 1493 aa22.15■■□□□ 1.14
CSNK1D-226ENST00000585026 CECR2Q9BXF3 1484 aa21.95■■□□□ 1.1
CSNK1D-226ENST00000585026 SCRIBQ14160 1630 aa21.94■■□□□ 1.1
CSNK1D-226ENST00000585026 CC2D2AQ9P2K1 1620 aa21.91■■□□□ 1.1
CSNK1D-226ENST00000585026 EIF4G1Q04637 1599 aaKnown RBP21.84■■□□□ 1.09
CSNK1D-226ENST00000585026 DNAJC5Q9H3Z4 198 aa21.27■■□□□ 1
CSNK1D-226ENST00000585026 NCAPD3P42695 1498 aa21.16■□□□□ 0.98
CSNK1D-226ENST00000585026 CUX2O14529 1486 aa21.07■□□□□ 0.96
CSNK1D-226ENST00000585026 ERCC6Q03468 1493 aa21.07■□□□□ 0.96
CSNK1D-226ENST00000585026 ATAD2BQ9ULI0 1458 aa21.04■□□□□ 0.96
CSNK1D-226ENST00000585026 SMARCA2P51531 1590 aa21.01■□□□□ 0.95
CSNK1D-226ENST00000585026 HMGXB3Q12766 1538 aa20.95■□□□□ 0.94
CSNK1D-226ENST00000585026 SMARCA4P51532 1647 aa20.93■□□□□ 0.94
CSNK1D-226ENST00000585026 BAZ1AQ9NRL2 1556 aaPredicted RBP20.86■□□□□ 0.93
CSNK1D-226ENST00000585026 BAZ1BQ9UIG0 1483 aaKnown RBP20.85■□□□□ 0.93
CSNK1D-226ENST00000585026 NESP48681 1621 aa20.79■□□□□ 0.92
CSNK1D-226ENST00000585026 PEG3Q9GZU2 1588 aa20.74■□□□□ 0.91
CSNK1D-226ENST00000585026 LAMC3Q9Y6N6 1575 aa20.68■□□□□ 0.9
CSNK1D-226ENST00000585026 PDS5BQ9NTI5 1447 aa20.65■□□□□ 0.9
CSNK1D-226ENST00000585026 MROH2BQ7Z745 1585 aa20.63■□□□□ 0.89
CSNK1D-226ENST00000585026 THOC2Q8NI27 1593 aaKnown RBP20.58■□□□□ 0.88
CSNK1D-226ENST00000585026 CADPSQ9ULU8 1353 aa20.53■□□□□ 0.88
CSNK1D-226ENST00000585026 KIF21AQ7Z4S6 1674 aa20.45■□□□□ 0.86
CSNK1D-226ENST00000585026 MRC2Q9UBG0 1479 aa20.42■□□□□ 0.86
CSNK1D-226ENST00000585026 WIZO95785 1651 aa20.33■□□□□ 0.85
CSNK1D-226ENST00000585026 WDR62O43379 1518 aa20.32■□□□□ 0.84
CSNK1D-226ENST00000585026 CEP164Q9UPV0 1460 aa20.31■□□□□ 0.84
CSNK1D-226ENST00000585026 TRIM41Q8WV44 630 aa20.27■□□□□ 0.84
CSNK1D-226ENST00000585026 FANCD2Q9BXW9 1451 aa20.26■□□□□ 0.83
CSNK1D-226ENST00000585026 CFTRP13569 1480 aa20.23■□□□□ 0.83
CSNK1D-226ENST00000585026 RSF1Q96T23 1441 aaPredicted RBP20.2■□□□□ 0.82
CSNK1D-226ENST00000585026 OSCARQ8IYS5 282 aa20.16■□□□□ 0.82
CSNK1D-226ENST00000585026 TOP2AP11388 1531 aaKnown RBP20.14■□□□□ 0.81
CSNK1D-226ENST00000585026 URB2Q14146 1524 aaKnown RBP20.05■□□□□ 0.8
CSNK1D-226ENST00000585026 IFT140Q96RY7 1462 aa19.93■□□□□ 0.78
CSNK1D-226ENST00000585026 CCDC88BA6NC98 1476 aa19.92■□□□□ 0.78
CSNK1D-226ENST00000585026 ABCC8Q09428 1581 aa19.88■□□□□ 0.77
CSNK1D-226ENST00000585026 PRDM2Q13029 1718 aa19.86■□□□□ 0.77
CSNK1D-226ENST00000585026 TOPBP1Q92547 1522 aa19.84■□□□□ 0.77
CSNK1D-226ENST00000585026 ZNF608Q9ULD9 1512 aaPredicted RBP19.83■□□□□ 0.77
CSNK1D-226ENST00000585026 DNMBPQ6XZF7 1577 aa19.74■□□□□ 0.75
CSNK1D-226ENST00000585026 RIMBP3CA6NJZ7 1639 aa19.74■□□□□ 0.75
CSNK1D-226ENST00000585026 RIMBP3BA6NNM3 1639 aa19.74■□□□□ 0.75
CSNK1D-226ENST00000585026 RIMBP3Q9UFD9 1639 aa19.74■□□□□ 0.75
CSNK1D-226ENST00000585026 ARHGEF11O15085 1522 aa19.71■□□□□ 0.75
CSNK1D-226ENST00000585026 EIF4G3O43432 1585 aaKnown RBP19.69■□□□□ 0.74
CSNK1D-226ENST00000585026 FBLN2P98095 1184 aa19.68■□□□□ 0.74
CSNK1D-226ENST00000585026 AQRO60306 1485 aaKnown RBP eCLIP19.67■□□□□ 0.745e-8■■■□□ 15.9
CSNK1D-226ENST00000585026 CYB5RLQ6IPT4 315 aa19.67■□□□□ 0.74
CSNK1D-226ENST00000585026 POLA1P09884 1462 aaPredicted RBP19.62■□□□□ 0.73
CSNK1D-226ENST00000585026 TARBP1Q13395 1621 aaKnown RBP19.62■□□□□ 0.73
CSNK1D-226ENST00000585026 SOGA1O94964 1423 aa19.59■□□□□ 0.73
CSNK1D-226ENST00000585026 TDRD9Q8NDG6 1382 aaKnown RBP19.56■□□□□ 0.72
CSNK1D-226ENST00000585026 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
CSNK1D-226ENST00000585026 TRHP20396 242 aaPredicted RBP19.54■□□□□ 0.72
CSNK1D-226ENST00000585026 CHD1O14646 1710 aa19.53■□□□□ 0.72
CSNK1D-226ENST00000585026 CHMP7Q8WUX9 453 aaPredicted RBP19.52■□□□□ 0.72
CSNK1D-226ENST00000585026 ARAP1Q96P48 1450 aa19.49■□□□□ 0.71
CSNK1D-226ENST00000585026 WDR97A6NE52 1622 aa19.49■□□□□ 0.71
CSNK1D-226ENST00000585026 FGD5Q6ZNL6 1462 aa19.48■□□□□ 0.71
CSNK1D-226ENST00000585026 SNAPC4Q5SXM2 1469 aa19.46■□□□□ 0.71
CSNK1D-226ENST00000585026 MAGI1Q96QZ7 1491 aaPredicted RBP19.45■□□□□ 0.7
CSNK1D-226ENST00000585026 GRIN2BQ13224 1484 aa19.44■□□□□ 0.7
CSNK1D-226ENST00000585026 SYNJ1O43426 1573 aa19.4■□□□□ 0.7
CSNK1D-226ENST00000585026 CUX1P39880 1505 aa19.4■□□□□ 0.7
CSNK1D-226ENST00000585026 SYNJ2O15056 1496 aa19.38■□□□□ 0.69
CSNK1D-226ENST00000585026 CLASP1Q7Z460 1538 aa19.36■□□□□ 0.69
CSNK1D-226ENST00000585026 GAPVD1Q14C86 1478 aa19.33■□□□□ 0.68
CSNK1D-226ENST00000585026 ABCA10Q8WWZ4 1543 aa19.27■□□□□ 0.68
CSNK1D-226ENST00000585026 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
CSNK1D-226ENST00000585026 WRNQ14191 1432 aaPredicted RBP eCLIP19.22■□□□□ 0.675e-6■■■■■ 38.2
CSNK1D-226ENST00000585026 PBRM1Q86U86 1689 aa19.2■□□□□ 0.66
CSNK1D-226ENST00000585026 ABCA5Q8WWZ7 1642 aa19.18■□□□□ 0.66
CSNK1D-226ENST00000585026 GRIN2AQ12879 1464 aa19.15■□□□□ 0.66
CSNK1D-226ENST00000585026 AEBP2Q6ZN18 517 aaPredicted RBP19.13■□□□□ 0.65
CSNK1D-226ENST00000585026 FHAD1B1AJZ9 1412 aa19.1■□□□□ 0.65
CSNK1D-226ENST00000585026 NUP160Q12769 1436 aa19.09■□□□□ 0.65
CSNK1D-226ENST00000585026 ADAMTS12P58397 1594 aa19.06■□□□□ 0.64
CSNK1D-226ENST00000585026 TOP2BQ02880 1626 aa19.06■□□□□ 0.64
CSNK1D-226ENST00000585026 CEP170Q5SW79 1584 aa19.03■□□□□ 0.64
CSNK1D-226ENST00000585026 ERICH3Q5RHP9 1530 aa19.03■□□□□ 0.64
CSNK1D-226ENST00000585026 BIVM-ERCC5R4GMW8 1640 aa19.02■□□□□ 0.64
CSNK1D-226ENST00000585026 ERCC6L2Q5T890 1561 aa19■□□□□ 0.63
CSNK1D-226ENST00000585026 JPH4Q96JJ6 628 aa18.98■□□□□ 0.63
CSNK1D-226ENST00000585026 SHROOM2Q13796 1616 aa18.96■□□□□ 0.63
CSNK1D-226ENST00000585026 PRG4Q92954 1404 aaPredicted RBP18.95■□□□□ 0.62
CSNK1D-226ENST00000585026 NPM1P06748 294 aaKnown RBP eCLIP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms