Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
CXCL12P48061 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC29.81■■■□□ 2.36
CXCL12P48061 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC29.81■■■□□ 2.36
CXCL12P48061 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC29.8■■■□□ 2.36
CXCL12P48061 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC29.8■■■□□ 2.36
CXCL12P48061 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC29.78■■■□□ 2.36
CXCL12P48061 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC29.78■■■□□ 2.36
CXCL12P48061 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC29.77■■■□□ 2.36
CXCL12P48061 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC29.76■■■□□ 2.35
CXCL12P48061 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC29.74■■■□□ 2.35
CXCL12P48061 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC29.74■■■□□ 2.35
CXCL12P48061 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC29.71■■■□□ 2.35
CXCL12P48061 RARRES2P7-201ENST00000567349 469 ntBASIC29.71■■■□□ 2.35
CXCL12P48061 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC29.71■■■□□ 2.35
CXCL12P48061 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
CXCL12P48061 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.67■■■□□ 2.34
CXCL12P48061 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
CXCL12P48061 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC29.65■■■□□ 2.34
CXCL12P48061 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC29.61■■■□□ 2.33
CXCL12P48061 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC29.58■■■□□ 2.33
CXCL12P48061 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
CXCL12P48061 AC097358.2-201ENST00000607541 1159 ntBASIC29.51■■■□□ 2.31
CXCL12P48061 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC29.48■■■□□ 2.31
CXCL12P48061 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC29.48■■■□□ 2.31
CXCL12P48061 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
CXCL12P48061 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC29.46■■■□□ 2.31
CXCL12P48061 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC29.45■■■□□ 2.3
CXCL12P48061 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.44■■■□□ 2.3
CXCL12P48061 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
CXCL12P48061 EBPL-203ENST00000378270 579 ntTSL 2 BASIC29.4■■■□□ 2.3
CXCL12P48061 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC29.4■■■□□ 2.3
CXCL12P48061 SETD8P1-201ENST00000623146 1180 ntBASIC29.38■■■□□ 2.29
CXCL12P48061 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC29.37■■■□□ 2.29
CXCL12P48061 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
CXCL12P48061 AC136428.2-201ENST00000563187 214 ntBASIC29.34■■■□□ 2.29
CXCL12P48061 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC29.32■■■□□ 2.28
CXCL12P48061 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC29.31■■■□□ 2.28
CXCL12P48061 KLF16-203ENST00000592313 508 ntTSL 3 BASIC29.29■■■□□ 2.28
CXCL12P48061 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC29.27■■■□□ 2.28
CXCL12P48061 SUZ12P1-203ENST00000578195 985 ntBASIC29.25■■■□□ 2.27
CXCL12P48061 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
CXCL12P48061 RPS2P35-201ENST00000443417 897 ntBASIC29.24■■■□□ 2.27
CXCL12P48061 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC29.22■■■□□ 2.27
CXCL12P48061 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CXCL12P48061 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CXCL12P48061 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC29.2■■■□□ 2.26
CXCL12P48061 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CXCL12P48061 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC29.18■■■□□ 2.26
CXCL12P48061 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CXCL12P48061 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
CXCL12P48061 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CXCL12P48061 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
CXCL12P48061 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
CXCL12P48061 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC29.14■■■□□ 2.26
CXCL12P48061 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
CXCL12P48061 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC29.09■■■□□ 2.25
CXCL12P48061 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC29.09■■■□□ 2.25
CXCL12P48061 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC29.08■■■□□ 2.25
CXCL12P48061 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.08■■■□□ 2.25
CXCL12P48061 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC29.07■■■□□ 2.24
CXCL12P48061 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC29.07■■■□□ 2.24
CXCL12P48061 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
CXCL12P48061 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.03■■■□□ 2.24
CXCL12P48061 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC28.95■■■□□ 2.22
CXCL12P48061 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
CXCL12P48061 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC28.93■■■□□ 2.22
CXCL12P48061 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
CXCL12P48061 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC28.88■■■□□ 2.21
CXCL12P48061 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
CXCL12P48061 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC28.88■■■□□ 2.21
CXCL12P48061 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC28.87■■■□□ 2.21
CXCL12P48061 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
CXCL12P48061 MVK-208ENST00000539696 608 ntTSL 5 BASIC28.84■■■□□ 2.21
CXCL12P48061 CAHM-201ENST00000604200 896 ntBASIC28.83■■■□□ 2.21
CXCL12P48061 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC28.82■■■□□ 2.2
CXCL12P48061 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CXCL12P48061 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC28.77■■■□□ 2.2
CXCL12P48061 AL162393.1-201ENST00000437852 946 ntBASIC28.77■■■□□ 2.2
CXCL12P48061 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC28.77■■■□□ 2.2
CXCL12P48061 AP006261.1-201ENST00000584783 668 ntBASIC28.76■■■□□ 2.19
CXCL12P48061 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC28.75■■■□□ 2.19
CXCL12P48061 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC28.75■■■□□ 2.19
CXCL12P48061 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CXCL12P48061 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CXCL12P48061 AC145285.7-201ENST00000614819 1539 ntBASIC28.71■■■□□ 2.19
CXCL12P48061 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CXCL12P48061 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CXCL12P48061 NRG1-221ENST00000614767 762 ntTSL 5 BASIC28.69■■■□□ 2.18
CXCL12P48061 AL391121.1-201ENST00000607967 1349 ntBASIC28.69■■■□□ 2.18
CXCL12P48061 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CXCL12P48061 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
CXCL12P48061 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CXCL12P48061 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
CXCL12P48061 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC28.65■■■□□ 2.18
CXCL12P48061 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CXCL12P48061 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
CXCL12P48061 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC28.63■■■□□ 2.17
CXCL12P48061 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CXCL12P48061 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
CXCL12P48061 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms