Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC35.05■■■■□ 3.2
CXCL12P48061 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC34.89■■■■□ 3.18
CXCL12P48061 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC34.42■■■■□ 3.1
CXCL12P48061 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC34.2■■■■□ 3.06
CXCL12P48061 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC33.88■■■■□ 3.01
CXCL12P48061 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC33.63■■■□□ 2.97
CXCL12P48061 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC33.42■■■□□ 2.94
CXCL12P48061 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
CXCL12P48061 AL356512.1-201ENST00000607453 1739 ntBASIC33.31■■■□□ 2.92
CXCL12P48061 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC33.28■■■□□ 2.92
CXCL12P48061 CACNG8-202ENST00000638874 1278 ntAPPRIS P2 TSL 1 (best) BASIC33.22■■■□□ 2.91
CXCL12P48061 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC33.1■■■□□ 2.89
CXCL12P48061 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC33.02■■■□□ 2.88
CXCL12P48061 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC33■■■□□ 2.87
CXCL12P48061 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CXCL12P48061 ALYREF-202ENST00000505490 1088 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CXCL12P48061 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
CXCL12P48061 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC32.59■■■□□ 2.81
CXCL12P48061 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.54■■■□□ 2.8
CXCL12P48061 FAM89B-203ENST00000530349 1263 ntAPPRIS P1 TSL 2 BASIC32.36■■■□□ 2.77
CXCL12P48061 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CXCL12P48061 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC32.34■■■□□ 2.77
CXCL12P48061 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC32.31■■■□□ 2.76
CXCL12P48061 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CXCL12P48061 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CXCL12P48061 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC32.09■■■□□ 2.73
CXCL12P48061 INO80B-203ENST00000409917 796 ntTSL 2 BASIC32.07■■■□□ 2.72
CXCL12P48061 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC32.06■■■□□ 2.72
CXCL12P48061 HES6-203ENST00000409160 1600 ntTSL 2 BASIC31.99■■■□□ 2.71
CXCL12P48061 ZNRF2P1-201ENST00000441407 443 ntBASIC31.83■■■□□ 2.69
CXCL12P48061 AC006077.2-201ENST00000623591 457 ntBASIC31.83■■■□□ 2.69
CXCL12P48061 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CXCL12P48061 AC008738.5-201ENST00000587312 482 ntTSL 3 BASIC31.74■■■□□ 2.67
CXCL12P48061 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC31.74■■■□□ 2.67
CXCL12P48061 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC31.65■■■□□ 2.66
CXCL12P48061 SATB1-AS1-216ENST00000598149 1119 ntTSL 2 BASIC31.62■■■□□ 2.65
CXCL12P48061 AC015813.7-201ENST00000623294 581 ntBASIC31.57■■■□□ 2.64
CXCL12P48061 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.53■■■□□ 2.64
CXCL12P48061 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
CXCL12P48061 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CXCL12P48061 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC31.17■■■□□ 2.58
CXCL12P48061 FAM89B-202ENST00000449319 1337 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
CXCL12P48061 AP002365.1-201ENST00000603448 772 ntBASIC31.03■■■□□ 2.56
CXCL12P48061 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC30.98■■■□□ 2.55
CXCL12P48061 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
CXCL12P48061 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
CXCL12P48061 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
CXCL12P48061 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
CXCL12P48061 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC30.85■■■□□ 2.53
CXCL12P48061 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.52
CXCL12P48061 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC30.81■■■□□ 2.52
CXCL12P48061 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CXCL12P48061 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.77■■■□□ 2.52
CXCL12P48061 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.77■■■□□ 2.52
CXCL12P48061 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC30.7■■■□□ 2.51
CXCL12P48061 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CXCL12P48061 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC30.67■■■□□ 2.5
CXCL12P48061 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.66■■■□□ 2.5
CXCL12P48061 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC30.63■■■□□ 2.49
CXCL12P48061 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC30.61■■■□□ 2.49
CXCL12P48061 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC30.55■■■□□ 2.48
CXCL12P48061 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC30.53■■■□□ 2.48
CXCL12P48061 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC30.51■■■□□ 2.48
CXCL12P48061 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.46■■■□□ 2.47
CXCL12P48061 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC30.45■■■□□ 2.47
CXCL12P48061 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC30.43■■■□□ 2.46
CXCL12P48061 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC30.43■■■□□ 2.46
CXCL12P48061 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC30.4■■■□□ 2.46
CXCL12P48061 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CXCL12P48061 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
CXCL12P48061 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC30.34■■■□□ 2.45
CXCL12P48061 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
CXCL12P48061 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC30.29■■■□□ 2.44
CXCL12P48061 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CXCL12P48061 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC30.24■■■□□ 2.43
CXCL12P48061 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CXCL12P48061 DYNLL1-208ENST00000550178 581 ntBASIC30.24■■■□□ 2.43
CXCL12P48061 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CXCL12P48061 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CXCL12P48061 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC30.19■■■□□ 2.42
CXCL12P48061 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
CXCL12P48061 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC30.15■■■□□ 2.42
CXCL12P48061 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC30.15■■■□□ 2.42
CXCL12P48061 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CXCL12P48061 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CXCL12P48061 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC30.1■■■□□ 2.41
CXCL12P48061 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CXCL12P48061 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
CXCL12P48061 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC30.04■■■□□ 2.4
CXCL12P48061 AL031258.1-201ENST00000623562 325 ntBASIC30■■■□□ 2.39
CXCL12P48061 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC29.97■■■□□ 2.39
CXCL12P48061 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.93■■■□□ 2.38
CXCL12P48061 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
CXCL12P48061 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.88■■■□□ 2.37
CXCL12P48061 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.88■■■□□ 2.37
CXCL12P48061 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.88■■■□□ 2.37
CXCL12P48061 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.87■■■□□ 2.37
CXCL12P48061 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.85■■■□□ 2.37
CXCL12P48061 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC29.84■■■□□ 2.37
CXCL12P48061 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.84■■■□□ 2.37
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms