Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
TRAV40A0A0B4J280 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRAV40A0A0B4J280 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC23.72■■□□□ 1.39
TRAV40A0A0B4J280 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
TRAV40A0A0B4J280 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC23.71■■□□□ 1.39
TRAV40A0A0B4J280 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
TRAV40A0A0B4J280 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
TRAV40A0A0B4J280 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
TRAV40A0A0B4J280 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC23.62■■□□□ 1.37
TRAV40A0A0B4J280 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
TRAV40A0A0B4J280 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC23.6■■□□□ 1.37
TRAV40A0A0B4J280 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
TRAV40A0A0B4J280 AL031258.1-201ENST00000623562 325 ntBASIC23.59■■□□□ 1.37
TRAV40A0A0B4J280 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
TRAV40A0A0B4J280 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC23.53■■□□□ 1.36
TRAV40A0A0B4J280 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC23.52■■□□□ 1.36
TRAV40A0A0B4J280 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC23.52■■□□□ 1.36
TRAV40A0A0B4J280 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
TRAV40A0A0B4J280 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC23.5■■□□□ 1.35
TRAV40A0A0B4J280 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC23.5■■□□□ 1.35
TRAV40A0A0B4J280 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
TRAV40A0A0B4J280 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
TRAV40A0A0B4J280 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC23.46■■□□□ 1.35
TRAV40A0A0B4J280 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
TRAV40A0A0B4J280 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
TRAV40A0A0B4J280 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
TRAV40A0A0B4J280 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC23.37■■□□□ 1.33
TRAV40A0A0B4J280 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
TRAV40A0A0B4J280 AC145285.7-201ENST00000614819 1539 ntBASIC23.35■■□□□ 1.33
TRAV40A0A0B4J280 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC23.34■■□□□ 1.33
TRAV40A0A0B4J280 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
TRAV40A0A0B4J280 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC23.33■■□□□ 1.33
TRAV40A0A0B4J280 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC23.33■■□□□ 1.33
TRAV40A0A0B4J280 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC23.31■■□□□ 1.32
TRAV40A0A0B4J280 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC23.31■■□□□ 1.32
TRAV40A0A0B4J280 EBPL-203ENST00000378270 579 ntTSL 2 BASIC23.3■■□□□ 1.32
TRAV40A0A0B4J280 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC23.29■■□□□ 1.32
TRAV40A0A0B4J280 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
TRAV40A0A0B4J280 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
TRAV40A0A0B4J280 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
TRAV40A0A0B4J280 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
TRAV40A0A0B4J280 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC23.26■■□□□ 1.31
TRAV40A0A0B4J280 RARRES2P7-201ENST00000567349 469 ntBASIC23.24■■□□□ 1.31
TRAV40A0A0B4J280 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
TRAV40A0A0B4J280 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC23.23■■□□□ 1.31
TRAV40A0A0B4J280 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV40A0A0B4J280 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC23.22■■□□□ 1.31
TRAV40A0A0B4J280 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
TRAV40A0A0B4J280 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
TRAV40A0A0B4J280 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC23.18■■□□□ 1.3
TRAV40A0A0B4J280 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC23.18■■□□□ 1.3
TRAV40A0A0B4J280 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
TRAV40A0A0B4J280 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
TRAV40A0A0B4J280 MVK-208ENST00000539696 608 ntTSL 5 BASIC23.14■■□□□ 1.29
TRAV40A0A0B4J280 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
TRAV40A0A0B4J280 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC23.12■■□□□ 1.29
TRAV40A0A0B4J280 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC23.11■■□□□ 1.29
TRAV40A0A0B4J280 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TRAV40A0A0B4J280 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC23.1■■□□□ 1.29
TRAV40A0A0B4J280 KLF16-203ENST00000592313 508 ntTSL 3 BASIC23.1■■□□□ 1.29
TRAV40A0A0B4J280 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
TRAV40A0A0B4J280 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC23.08■■□□□ 1.29
TRAV40A0A0B4J280 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC23.06■■□□□ 1.28
TRAV40A0A0B4J280 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
TRAV40A0A0B4J280 SETD8P1-201ENST00000623146 1180 ntBASIC23.05■■□□□ 1.28
TRAV40A0A0B4J280 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
TRAV40A0A0B4J280 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC23.04■■□□□ 1.28
TRAV40A0A0B4J280 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
TRAV40A0A0B4J280 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
TRAV40A0A0B4J280 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAV40A0A0B4J280 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC23.01■■□□□ 1.27
TRAV40A0A0B4J280 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
TRAV40A0A0B4J280 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC23.01■■□□□ 1.27
TRAV40A0A0B4J280 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
TRAV40A0A0B4J280 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC23■■□□□ 1.27
TRAV40A0A0B4J280 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC23■■□□□ 1.27
TRAV40A0A0B4J280 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC23■■□□□ 1.27
TRAV40A0A0B4J280 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC22.99■■□□□ 1.27
TRAV40A0A0B4J280 AC097358.2-201ENST00000607541 1159 ntBASIC22.98■■□□□ 1.27
TRAV40A0A0B4J280 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.96■■□□□ 1.27
TRAV40A0A0B4J280 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
TRAV40A0A0B4J280 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
TRAV40A0A0B4J280 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
TRAV40A0A0B4J280 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
TRAV40A0A0B4J280 AC136428.2-201ENST00000563187 214 ntBASIC22.92■■□□□ 1.26
TRAV40A0A0B4J280 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC22.91■■□□□ 1.26
TRAV40A0A0B4J280 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
TRAV40A0A0B4J280 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC22.91■■□□□ 1.26
TRAV40A0A0B4J280 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.26
TRAV40A0A0B4J280 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC22.88■■□□□ 1.25
TRAV40A0A0B4J280 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
TRAV40A0A0B4J280 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC22.85■■□□□ 1.25
TRAV40A0A0B4J280 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC22.85■■□□□ 1.25
TRAV40A0A0B4J280 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC22.83■■□□□ 1.25
TRAV40A0A0B4J280 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC22.83■■□□□ 1.25
TRAV40A0A0B4J280 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
TRAV40A0A0B4J280 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRAV40A0A0B4J280 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC22.81■■□□□ 1.24
TRAV40A0A0B4J280 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TRAV40A0A0B4J280 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC22.81■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 128.6 ms